Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | SMI_RS07715 | Genome accession | NC_013853 |
| Coordinates | 1534459..1534929 (-) | Length | 156 a.a. |
| NCBI ID | WP_000609606.1 | Uniprot ID | A0A0U0CT68 |
| Organism | Streptococcus mitis B6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 1535468..1536634 | 1534459..1534929 | flank | 539 |
Gene organization within MGE regions
Location: 1534459..1536634
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SMI_RS07715 (smi_1522) | ssbA | 1534459..1534929 (-) | 471 | WP_000609606.1 | single-stranded DNA-binding protein SsbA | Machinery gene |
| SMI_RS07720 (smi_1523) | rpsF | 1534941..1535231 (-) | 291 | WP_001151779.1 | 30S ribosomal protein S6 | - |
| SMI_RS07725 (smi_1524) | - | 1535468..1536634 (+) | 1167 | WP_000163009.1 | IS30-like element ISSmi1 family transposase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17352.20 Da Isoelectric Point: 4.9164
>NTDB_id=36327 SMI_RS07715 WP_000609606.1 1534459..1534929(-) (ssbA) [Streptococcus mitis B6]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPTANYSAPTNSVPDFSRDENPFGATNPLDISDDDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=36327 SMI_RS07715 WP_000609606.1 1534459..1534929(-) (ssbA) [Streptococcus mitis B6]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGATGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTAGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCATACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCGCCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGATGCTGAGTTGCGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAACCTAGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTGACAGGTCGTATCCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACAGAGGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAGGGTCATACAGGTGGAGCTTACTCTGCACCAACTGCAAACTATTCAGCGCCTACAAATTCAGTACCAGACT
TTTCACGTGATGAAAATCCATTTGGAGCAACAAATCCATTGGATATTTCAGATGATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.233 |
100 |
0.609 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
53.409 |
100 |
0.603 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
51.282 |
75 |
0.385 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
67.949 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus mitis SK321 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
50.427 |
75 |
0.378 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
50.427 |
75 |
0.378 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
54.128 |
69.872 |
0.378 |