Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   FD735_RS09790 Genome accession   NZ_CP040231
Coordinates   1896297..1897493 (+) Length   398 a.a.
NCBI ID   WP_070569607.1    Uniprot ID   -
Organism   Streptococcus sp. 1643     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1891297..1902493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FD735_RS09750 (FD735_09750) - 1892358..1892900 (+) 543 WP_070569601.1 TetR/AcrR family transcriptional regulator -
  FD735_RS09765 (FD735_09765) comE 1893136..1893888 (-) 753 WP_000866079.1 competence system response regulator transcription factor ComE Regulator
  FD735_RS09770 (FD735_09770) comD 1893885..1895204 (-) 1320 WP_139659086.1 competence system sensor histidine kinase ComD Regulator
  FD735_RS09775 (FD735_09775) comC/comC2 1895225..1895350 (-) 126 WP_000799678.1 competence-stimulating peptide ComC Regulator
  FD735_RS09785 (FD735_09785) rlmH 1895632..1896111 (-) 480 WP_070569604.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  FD735_RS09790 (FD735_09790) htrA 1896297..1897493 (+) 1197 WP_070569607.1 S1C family serine protease Regulator
  FD735_RS09795 (FD735_09795) spo0J 1897551..1898309 (+) 759 WP_139659087.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 398 a.a.        Molecular weight: 42042.85 Da        Isoelectric Point: 6.3586

>NTDB_id=362681 FD735_RS09790 WP_070569607.1 1896297..1897493(+) (htrA) [Streptococcus sp. 1643]
MKHLQKFYKKGVKVLIIILIGFLSGALGSFVTLQLYQKQGNQATNNNSGTVTQTSYKNENSTTQAVNKVKDAVVSIITYS
SSSSRQSSVFNADETNSDSDNQQIASEGSGVIYKKDDKDAYLVTNTHVINGASKVDIRLADGTKVPGEIVGSDTFSDIAV
VKISSEKVTTVAEFGDSSQLSVGETAIAIGSPLGSEYANTVTQGIISSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSG
GPLVNIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDAQNIIKQLESDGKVTRPALGIQMVNLSNVGASDLRKLNIPSGL
TSGVVVRSVQNNMPANGHLQKYDVITKVDDKEIASSTDLQHALYNHAIGDTIKVTYYRNGKEETTSIKLDKNSSDLES

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=362681 FD735_RS09790 WP_070569607.1 1896297..1897493(+) (htrA) [Streptococcus sp. 1643]
ATGAAACACTTACAAAAATTTTACAAAAAAGGAGTTAAAGTTCTAATAATCATTCTAATCGGATTTTTAAGTGGTGCCTT
AGGAAGTTTCGTAACATTACAACTTTATCAAAAACAAGGAAATCAAGCTACAAATAATAATTCTGGCACTGTCACTCAAA
CATCCTATAAGAATGAAAATTCAACCACTCAAGCAGTAAATAAAGTTAAGGATGCTGTTGTCTCAATCATTACTTATTCT
TCTTCTAGCAGTAGACAAAGTAGTGTATTTAATGCTGACGAAACTAATTCTGATTCAGACAATCAACAAATCGCAAGTGA
GGGATCAGGTGTTATCTATAAAAAGGATGATAAAGATGCCTATCTTGTAACTAATACTCACGTTATCAATGGAGCTTCAA
AAGTTGATATCCGCTTAGCAGATGGTACTAAGGTTCCTGGTGAAATTGTCGGATCTGATACCTTCTCTGATATTGCTGTC
GTTAAAATTTCTTCCGAAAAAGTTACAACAGTCGCAGAATTTGGAGATTCAAGTCAACTTAGTGTTGGAGAAACAGCGAT
TGCTATCGGTAGTCCTCTAGGTTCAGAATATGCTAATACAGTTACACAGGGGATTATTTCAAGTCTTAATCGAAATGTTT
CTCTAAAATCTGAAGATGGTCAAGCTATTTCAACAAAAGCCATTCAAACAGATACAGCCATTAACCCTGGTAACTCTGGT
GGTCCACTTGTAAATATTCAAGGACAAGTAATTGGTATTACATCAAGTAAAATTGCAAGTAATGGTGGAACATCTGTAGA
AGGTCTTGGTTTTGCAATTCCTTCAAACGATGCACAAAATATCATTAAACAACTTGAAAGTGATGGTAAAGTGACTCGTC
CTGCTCTTGGAATTCAAATGGTCAATCTGTCAAATGTTGGAGCTAGTGATCTTAGAAAACTTAACATTCCAAGTGGCCTC
ACTTCAGGTGTAGTTGTTCGATCTGTTCAAAACAATATGCCAGCAAATGGACATCTTCAAAAATATGATGTCATTACCAA
AGTTGACGACAAAGAGATTGCCTCATCAACAGACCTACAACACGCTCTTTACAATCATGCTATCGGAGATACGATCAAAG
TAACCTACTACCGTAACGGTAAGGAGGAAACAACCTCAATTAAACTAGATAAGAATTCTAGTGATTTAGAGTCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

83.166

100

0.832

  htrA Streptococcus pneumoniae Rx1

82.412

100

0.824

  htrA Streptococcus pneumoniae D39

82.412

100

0.824

  htrA Streptococcus pneumoniae R6

82.412

100

0.824

  htrA Streptococcus pneumoniae TIGR4

82.412

100

0.824

  htrA Streptococcus gordonii str. Challis substr. CH1

66.915

100

0.676

  htrA Streptococcus mutans UA159

54.822

98.995

0.543


Multiple sequence alignment