Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ALVIN_RS00815 Genome accession   NC_013851
Coordinates   169860..171110 (-) Length   416 a.a.
NCBI ID   WP_012969407.1    Uniprot ID   D3RVK4
Organism   Allochromatium vinosum DSM 180     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 164860..176110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALVIN_RS00790 (Alvin_0157) glcE 165338..166420 (+) 1083 WP_012969402.1 glycolate oxidase subunit GlcE -
  ALVIN_RS00795 (Alvin_0158) glcF 166438..167664 (+) 1227 WP_012969403.1 glycolate oxidase subunit GlcF -
  ALVIN_RS00800 (Alvin_0159) - 167704..168051 (-) 348 WP_012969404.1 hypothetical protein -
  ALVIN_RS00805 (Alvin_0160) coaE 168335..168946 (-) 612 WP_012969405.1 dephospho-CoA kinase -
  ALVIN_RS00810 (Alvin_0161) pilD 168943..169833 (-) 891 WP_012969406.1 A24 family peptidase Machinery gene
  ALVIN_RS00815 (Alvin_0162) pilC 169860..171110 (-) 1251 WP_012969407.1 type II secretion system F family protein Machinery gene
  ALVIN_RS00820 (Alvin_0163) pilB 171133..172848 (-) 1716 WP_012969408.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ALVIN_RS00825 (Alvin_0164) - 172875..173708 (-) 834 WP_012969409.1 NYN domain-containing protein -
  ALVIN_RS00830 (Alvin_0165) acs 173927..175873 (-) 1947 WP_012969410.1 acetate--CoA ligase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45146.18 Da        Isoelectric Point: 10.0151

>NTDB_id=36257 ALVIN_RS00815 WP_012969407.1 169860..171110(-) (pilC) [Allochromatium vinosum DSM 180]
MALVTTTKAKPKPKTEEAKVFTWEGTDRRGARVKGESRAANTNAVRADLRRQGVNPTRVKAKPKPLFGGGRKKITGQDLS
IFTRQLATMMSAGVPLVQAFDIVGRGHENPAMQDIILAIKQDIESGTAMSIAMAKHPLHFDDLVCSLVAAGEQAGVLDVL
LDKIATYKEKTESIKGKIKKALFYPAAVIVVAVIVTVVILLFVIPQFKELFSSFGADLPAFTLMVIGLSDLIREWWWAFF
GGLGALVYTIAYVFKRSRAFREIVDRASLKIPIIGAILNKAAIARFARTLSTMFAAGVPLVEALQSVSGATGNVVYQDAV
MKMREEVATGQSLQLAMRQRNLFPHMVIQMTAIGEESGALDDMLGKVADFYEEQVDNAVDSLSSLLEPMIMVVIGGLVGS
LVVAMYLPIFKLAAVV

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=36257 ALVIN_RS00815 WP_012969407.1 169860..171110(-) (pilC) [Allochromatium vinosum DSM 180]
ATGGCACTTGTCACCACGACCAAGGCCAAGCCAAAGCCCAAAACCGAGGAGGCCAAGGTCTTCACCTGGGAGGGCACCGA
CCGGCGCGGGGCGCGGGTCAAGGGTGAGTCGCGCGCCGCCAACACCAATGCGGTACGCGCCGATCTGCGTCGCCAGGGCG
TCAACCCGACCAGGGTCAAGGCCAAGCCCAAGCCGCTGTTCGGCGGCGGCAGGAAGAAAATCACGGGTCAGGATCTCTCC
ATCTTCACCCGCCAGCTCGCCACCATGATGTCGGCCGGTGTGCCCCTGGTGCAAGCCTTCGACATCGTCGGGCGCGGACA
CGAGAACCCGGCGATGCAGGACATCATCCTCGCGATCAAGCAGGACATCGAGAGCGGCACGGCCATGTCGATCGCCATGG
CCAAGCATCCGCTCCATTTCGACGATCTGGTGTGCAGTCTGGTCGCGGCCGGCGAGCAGGCCGGTGTGCTCGACGTGCTG
CTCGACAAGATCGCGACCTACAAGGAGAAGACCGAGTCGATCAAGGGCAAGATCAAGAAGGCGCTCTTCTATCCGGCCGC
CGTCATCGTGGTGGCGGTGATCGTCACCGTGGTCATCCTGCTGTTCGTCATCCCGCAGTTCAAGGAGCTGTTCTCGAGTT
TCGGTGCCGATCTGCCCGCCTTCACGCTCATGGTCATCGGACTCTCGGACCTGATCCGCGAATGGTGGTGGGCCTTCTTC
GGCGGCCTGGGCGCACTCGTCTATACCATCGCCTATGTCTTCAAGCGTTCGCGTGCCTTTCGCGAGATCGTCGACCGCGC
CAGCCTGAAGATCCCGATCATCGGCGCCATCCTGAACAAGGCGGCCATCGCCCGCTTCGCGCGCACGCTCTCGACCATGT
TCGCCGCCGGCGTGCCCCTGGTCGAGGCGTTGCAATCGGTCTCGGGCGCGACCGGCAACGTCGTCTATCAGGACGCGGTG
ATGAAGATGCGCGAGGAGGTCGCCACGGGTCAGTCGCTGCAACTGGCCATGCGACAGCGCAATCTCTTTCCGCACATGGT
CATCCAGATGACCGCGATCGGCGAGGAGTCGGGCGCGCTCGACGACATGCTCGGCAAGGTCGCCGACTTCTACGAGGAGC
AGGTCGACAACGCGGTCGACAGTCTGAGCAGTCTGCTGGAGCCCATGATCATGGTCGTCATCGGCGGTCTGGTCGGGAGT
CTGGTGGTGGCCATGTATCTGCCGATCTTCAAGCTGGCCGCCGTCGTCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(286-408)

Type II secretion system (T2SS), protein F (T2SSF)

(82-205)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D3RVK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

57.576

95.192

0.548
  pilC Pseudomonas stutzeri DSM 10701

55.416

95.433

0.529
  pilC Acinetobacter baumannii D1279779

54.455

97.115

0.529
  pilC Acinetobacter baylyi ADP1

53.218

97.115

0.517
  pilG Neisseria meningitidis 44/76-A

45.679

97.356

0.445
  pilG Neisseria gonorrhoeae MS11

45.679

97.356

0.445
  pilC Vibrio campbellii strain DS40M4

43.284

96.635

0.418
  pilC Vibrio cholerae strain A1552

41.96

95.673

0.401
  pilC Thermus thermophilus HB27

38.095

95.913

0.365

Multiple sequence alignment