Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FDQ49_RS07890 Genome accession   NZ_CP040105
Coordinates   1688577..1689803 (+) Length   408 a.a.
NCBI ID   WP_022575843.1    Uniprot ID   A0A2L1VKR8
Organism   Acinetobacter nosocomialis M2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1683577..1694803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDQ49_RS07855 (FDQ49_07855) rimP 1684249..1684773 (-) 525 WP_002157009.1 ribosome maturation factor RimP -
  FDQ49_RS07875 (FDQ49_07875) secG 1685410..1685739 (-) 330 WP_002156913.1 preprotein translocase subunit SecG -
  FDQ49_RS07880 (FDQ49_07880) tpiA 1685752..1686546 (-) 795 WP_022575842.1 triose-phosphate isomerase -
  FDQ49_RS07885 (FDQ49_07885) pilB 1686837..1688549 (+) 1713 WP_004710829.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FDQ49_RS07890 (FDQ49_07890) pilC 1688577..1689803 (+) 1227 WP_022575843.1 type II secretion system F family protein Machinery gene
  FDQ49_RS18305 (FDQ49_07895) pilD 1689803..1690663 (+) 861 WP_022575844.1 A24 family peptidase Machinery gene
  FDQ49_RS07900 (FDQ49_07900) coaE 1690665..1691261 (+) 597 WP_000874125.1 dephospho-CoA kinase -
  FDQ49_RS07905 (FDQ49_07905) - 1691258..1692172 (-) 915 WP_022575845.1 DMT family transporter -
  FDQ49_RS07910 (FDQ49_07910) rlmB 1692208..1692957 (-) 750 WP_002156969.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  FDQ49_RS07915 (FDQ49_07915) - 1693059..1693385 (-) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  FDQ49_RS07920 (FDQ49_07920) - 1693462..1694772 (-) 1311 WP_022575846.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45031.52 Da        Isoelectric Point: 9.8883

>NTDB_id=362223 FDQ49_RS07890 WP_022575843.1 1688577..1689803(+) (pilC) [Acinetobacter nosocomialis M2]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRTIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKSEVEGGSTFASALKKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFSSFGAELPAFTQMVVNMSKWMQEYWFIMIIAIGVFIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=362223 FDQ49_RS07890 WP_022575843.1 1688577..1689803(+) (pilC) [Acinetobacter nosocomialis M2]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAACTATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTCACTACACTCGATATTACGATTTTTACCCGACAACTTGCGACT
ATGATGAAAGCTGGTGTACCTCTAGTACAAGGCTTTGAAATTGTAGCAGAAGGTTTAGAAAACCCTGCCATGCGAGAGGT
TGTCCTCGGTATTAAAAGTGAAGTTGAAGGGGGTAGTACCTTTGCCTCAGCTTTAAAAAAGTACCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAATCTGGTGAACAGTCAGGTGCACTCGAAACGATGTTGGACCGCGTTGCAATTTATAAA
GAAAAAAGTGAGTTGCTCAAACAAAAAATCAAGAAAGCAATGAAATACCCTGCAACAGTTATTGTGGTAGCCATTGTGGT
GACTATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATCTGTTTTCTTCTTTCGGCGCAGAATTACCAGCATTCA
CACAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGTGTATTTATTGCT
GCGTTTTTAGAAGCAAAAAAACGTAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTCGG
AGATCTGGTTTATAAAGCAATTATTGCCCGTTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCGCTTATTG
ATGCACTAGAGTCGACTGCAGGCGCAACAAATAATGTCATTTATGAGCAAGCTGTGATGAAAATTCGTGAAGATGTGGCG
ACCGGTCAACAACTTCAATTTGCTATGCGAGTATCTAATCGTTTTCCATCTATGGCTATACAAATGGTTGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTACTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2L1VKR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.794

100

0.978
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

47.118

97.794

0.461
  pilG Neisseria meningitidis 44/76-A

47.118

97.794

0.461
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.594

99.02

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment