Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   FDP11_RS09290 Genome accession   NZ_CP040100
Coordinates   254306..256054 (+) Length   582 a.a.
NCBI ID   WP_025556542.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain LVP1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 249306..261054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FDP11_RS09270 (FDP11_09990) pilM 251605..252621 (+) 1017 WP_005480475.1 type IV pilus biogenesis protein PilM Machinery gene
  FDP11_RS09275 (FDP11_09995) pilN 252605..253183 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  FDP11_RS09280 (FDP11_10000) pilO 253176..253769 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  FDP11_RS09285 (FDP11_10005) pilP 253759..254274 (+) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  FDP11_RS09290 (FDP11_10010) pilQ 254306..256054 (+) 1749 WP_025556542.1 type IV pilus secretin PilQ Machinery gene
  FDP11_RS09295 (FDP11_10015) aroK 256243..256761 (+) 519 WP_005381319.1 shikimate kinase AroK -
  FDP11_RS09300 (FDP11_10020) aroB 256793..257893 (+) 1101 WP_178981741.1 3-dehydroquinate synthase -
  FDP11_RS09305 (FDP11_10025) - 257946..259463 (+) 1518 WP_017449466.1 SPOR domain-containing protein -
  FDP11_RS09310 (FDP11_10030) - 259533..260372 (+) 840 WP_005486862.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 63840.95 Da        Isoelectric Point: 4.4411

>NTDB_id=362083 FDP11_RS09290 WP_025556542.1 254306..256054(+) (pilQ) [Vibrio parahaemolyticus strain LVP1]
MKMRQGLTRTPRMLTGLFSLWLFLLLAPLAAAEDVQSNALKSIDFRTNKSKDAVIVVELASPAAIVDVKRVQEGLSIDLM
NTSVKDEQLYLLDVKDFATVVESVEVFRDTSTTRLVAYIDEEYTHDYRLTGRYLEITVSKLKPNEKVPDKSILEKEGKLI
SINFQDIPVRNVLQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQ
LEKQKLTEEMGELSSEIIKVNFAKASDIAEMINGEDNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK
QVQIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGSDGEGEEGGDGVGIDDFLNVNLAATNKSA
ASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQ
ITPDNRLVLDLSVTQDRPGKVVKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFR
RSYENVGKSELLIFVTPKVVIQ

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=362083 FDP11_RS09290 WP_025556542.1 254306..256054(+) (pilQ) [Vibrio parahaemolyticus strain LVP1]
ATGAAAATGAGACAAGGATTAACACGTACACCAAGGATGCTTACTGGGCTCTTCTCCTTATGGTTGTTTTTACTTCTAGC
CCCTTTAGCAGCAGCAGAAGATGTACAGTCTAATGCGCTCAAGAGCATCGACTTTCGCACTAACAAAAGCAAAGATGCCG
TGATTGTGGTGGAGCTTGCATCCCCGGCGGCTATTGTTGATGTTAAACGTGTTCAAGAAGGATTAAGTATTGATTTAATG
AACACGTCGGTAAAAGACGAACAGCTTTACCTTCTCGACGTGAAAGATTTCGCGACGGTGGTGGAAAGTGTGGAAGTGTT
CCGCGATACCTCCACCACACGATTAGTTGCGTATATCGATGAAGAATACACGCATGACTATCGTTTGACGGGGCGTTATC
TTGAAATCACTGTCAGCAAGCTTAAACCAAATGAAAAAGTGCCAGACAAGAGCATCTTAGAAAAAGAAGGCAAGCTGATC
TCGATTAACTTTCAAGACATTCCTGTGCGTAACGTTTTGCAGCTGATTGCAGATTACAACCAGTTTAACTTGGTGGTTTC
GGACTCTGTCGAAGGCAACCTTACACTGCGTCTTGATGGTGTGCCGTGGCAGCAAGTGCTCGACATCATCTTGCAAGTGA
AAGGGTTGGATAAGCGTGTTGATGGCAACGTGATTTTGGTCGCTCCGACCGATGAGCTGGATTTGCGCGAGAAGCAGCAG
TTAGAAAAACAAAAGCTGACGGAAGAAATGGGTGAACTTTCATCAGAAATCATCAAAGTCAATTTTGCTAAAGCTTCGGA
TATTGCAGAGATGATTAATGGTGAAGACAACATTAGCATGTTGTCAGAGCGTGGCAGTATGACCATTGATGAACGAACCA
ATTCGCTATTAATCAGAGAATTGCCAGAGAACATCGCCGTTATTCGCGAAATCATTGAATCGCTCGATATCCCAGTAAAA
CAAGTACAAATTGAAGCCCGAATTGTCACCATCAATGAGGGGAACATGGATGAGTTAGGTATTCGTTGGGGCTTCACATC
TATTAATGGTAATAACACCGTTGGTGGCTCTATTGAGAACAACCTTGCGACAATCGGCTTGTACGAAGGTGGTAGTGACG
GCGAAGGTGAAGAGGGTGGTGATGGTGTTGGTATCGATGATTTCCTTAATGTGAACTTAGCTGCAACTAATAAAAGTGCT
GCAAGCATTGCGTTCCAAGTGGCAAAGTTAGGTTCTGATACATTATTGGACTTAGAGCTGTCTGCATTACAGCAAGAATC
AAAAGCAGAAATCATTTCGAGCCCACGATTGATCACGACCAATAAGAAGCCTGCGTACATTGAACAAGGTACCGAAATTC
CTTATCTAGAATCTTCATCGAGTGGTGCAACGTCAGTGGCCTTTAAAAAAGCGGTGTTGAGCTTGAAGGTGACACCGCAG
ATCACACCTGACAATCGTTTAGTGTTGGATCTGAGTGTGACCCAAGACCGACCTGGTAAGGTAGTGAAAACGGGCACAGG
AGAGGCAATGGCAATTGATACGCAGCGCATTGGCACCCAAGTTCTGGTGAATAATGGTGAGACGGTTGTGCTCGGTGGTA
TTTTCCAGCACAGCATTACTAACTCAGTGGATAAAGTGCCATTGTTGGGCGATCTTCCGCTATTAGGCGCACTTTTCCGC
CGAAGTTACGAAAACGTTGGTAAAAGTGAGTTGCTAATTTTCGTTACGCCTAAGGTCGTTATTCAGTAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(422-580)

Bacterial type II/III secretion system short domain (Secretin_N)

(256-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

91.237

100

0.912
  pilQ Vibrio cholerae strain A1552

76.232

97.595

0.744
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

76.232

97.595

0.744
  pilQ Pseudomonas aeruginosa PAK

39.049

100

0.395
  pilQ Legionella pneumophila strain ERS1305867

41.273

94.502

0.39
  pilQ Legionella pneumophila strain Lp02

41.273

94.502

0.39
  pilQ Acinetobacter baumannii D1279779

37.291

100

0.383
  pilQ Acinetobacter baumannii strain A118

37.291

100

0.383
  comQ Acinetobacter baylyi ADP1

38.25

100

0.383

Multiple sequence alignment