Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | FDP11_RS09275 | Genome accession | NZ_CP040100 |
| Coordinates | 252605..253183 (+) | Length | 192 a.a. |
| NCBI ID | WP_015297396.1 | Uniprot ID | A0A243VIJ8 |
| Organism | Vibrio parahaemolyticus strain LVP1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 247605..258183
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDP11_RS09260 (FDP11_09980) | oxyR | 247928..248836 (+) | 909 | WP_178981739.1 | DNA-binding transcriptional regulator OxyR | - |
| FDP11_RS09265 (FDP11_09985) | - | 248892..251462 (-) | 2571 | WP_005496567.1 | penicillin-binding protein 1A | - |
| FDP11_RS09270 (FDP11_09990) | pilM | 251605..252621 (+) | 1017 | WP_005480475.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| FDP11_RS09275 (FDP11_09995) | pilN | 252605..253183 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| FDP11_RS09280 (FDP11_10000) | pilO | 253176..253769 (+) | 594 | WP_005480482.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| FDP11_RS09285 (FDP11_10005) | pilP | 253759..254274 (+) | 516 | WP_005480477.1 | pilus assembly protein PilP | Machinery gene |
| FDP11_RS09290 (FDP11_10010) | pilQ | 254306..256054 (+) | 1749 | WP_025556542.1 | type IV pilus secretin PilQ | Machinery gene |
| FDP11_RS09295 (FDP11_10015) | aroK | 256243..256761 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| FDP11_RS09300 (FDP11_10020) | aroB | 256793..257893 (+) | 1101 | WP_178981741.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22438.95 Da Isoelectric Point: 6.9944
>NTDB_id=362080 FDP11_RS09275 WP_015297396.1 252605..253183(+) (pilN) [Vibrio parahaemolyticus strain LVP1]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG
Nucleotide
Download Length: 579 bp
>NTDB_id=362080 FDP11_RS09275 WP_015297396.1 252605..253183(+) (pilN) [Vibrio parahaemolyticus strain LVP1]
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
GTGCTTTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTATCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCCGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Vibrio campbellii strain DS40M4 |
83.333 |
100 |
0.833 |
| pilN | Vibrio cholerae strain A1552 |
62.983 |
94.271 |
0.594 |