Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | FCL38_RS25790 | Genome accession | NZ_CP040017 |
| Coordinates | 6114309..6115520 (-) | Length | 403 a.a. |
| NCBI ID | WP_137316250.1 | Uniprot ID | A0A4P8HU21 |
| Organism | Pseudoduganella umbonata strain DSMZ 26121 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6109309..6120520
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FCL38_RS25770 (FCL38_25770) | pilD | 6109916..6110791 (-) | 876 | WP_137316247.1 | A24 family peptidase | Machinery gene |
| FCL38_RS25775 (FCL38_25775) | - | 6111022..6111453 (+) | 432 | WP_137316248.1 | DUF2231 domain-containing protein | - |
| FCL38_RS25780 (FCL38_25780) | - | 6111450..6112769 (+) | 1320 | WP_371861437.1 | sorbosone dehydrogenase family protein | - |
| FCL38_RS25785 (FCL38_25785) | - | 6113049..6114233 (+) | 1185 | WP_137316249.1 | alpha/beta fold hydrolase | - |
| FCL38_RS25790 (FCL38_25790) | pilC | 6114309..6115520 (-) | 1212 | WP_137316250.1 | type II secretion system F family protein | Machinery gene |
| FCL38_RS25795 (FCL38_25795) | pilB | 6115529..6117250 (-) | 1722 | WP_137316251.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FCL38_RS25800 (FCL38_25800) | - | 6117565..6118782 (+) | 1218 | WP_137316252.1 | glutamate carboxypeptidase | - |
| FCL38_RS25805 (FCL38_25805) | - | 6118812..6120362 (+) | 1551 | WP_137316253.1 | carboxylesterase/lipase family protein | - |
Sequence
Protein
Download Length: 403 a.a. Molecular weight: 43719.67 Da Isoelectric Point: 9.6811
>NTDB_id=361648 FCL38_RS25790 WP_137316250.1 6114309..6115520(-) (pilC) [Pseudoduganella umbonata strain DSMZ 26121]
MAHAGGIKESIFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTDKDITLFTRQLATMMKAG
VPLLQSFDIVGKGHANPAVSKLVMDLRADIETGTSLNGAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTLA
MKAKIKSALTYPIAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPTPTLVVMAISEFFVDWWYVIFGGLFASVYFFFQA
WRRSLSMQQAMDRLLLKVPVFGAVIRKATIARWTRTLATMFAAGVPLVEALDSVGGAAGNAVYLDATRKIQSEVSTGVSL
TVAMQNVEVFPNMVTQMVAIGEESGALDSMLGKVADFFEEEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYLPIFKLG
SVV
MAHAGGIKESIFAWEGKDKTGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKVTDKDITLFTRQLATMMKAG
VPLLQSFDIVGKGHANPAVSKLVMDLRADIETGTSLNGAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKTLA
MKAKIKSALTYPIAILAVAFIVTAVIMIWVVPAFKEVFTSFGADLPTPTLVVMAISEFFVDWWYVIFGGLFASVYFFFQA
WRRSLSMQQAMDRLLLKVPVFGAVIRKATIARWTRTLATMFAAGVPLVEALDSVGGAAGNAVYLDATRKIQSEVSTGVSL
TVAMQNVEVFPNMVTQMVAIGEESGALDSMLGKVADFFEEEVDEAVASLSSLMEPAIMVILGVLIGGLVVAMYLPIFKLG
SVV
Nucleotide
Download Length: 1212 bp
>NTDB_id=361648 FCL38_RS25790 WP_137316250.1 6114309..6115520(-) (pilC) [Pseudoduganella umbonata strain DSMZ 26121]
ATGGCACACGCGGGCGGCATCAAGGAATCCATCTTTGCCTGGGAAGGCAAGGACAAGACAGGGAAAACCGTGCGCGGCGA
ACTGCGCGCGGGCGGCGAGGCGGTCGTCAACGTGACGCTGCGCCGGCAGGGCATCATGGTCACCAAGGTCAAGAAAAAGG
TGTACCGCTCCGGCAAGAAGGTCACCGACAAGGACATCACGCTGTTCACCCGCCAGCTGGCGACGATGATGAAGGCCGGC
GTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGGCACGCCAACCCGGCCGTGTCGAAACTGGTGATGGACCTGCG
CGCGGACATCGAGACCGGCACCAGCCTGAATGGCGCGTTTCGCAAGTTCCCGCTGTATTTCGACCCGCTGTTCTGCAACC
TGGTGGGCGCCGGCGAACAGGCTGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATCTACAAGGAAAAGACGCTGGCG
ATGAAAGCCAAGATCAAGTCGGCGCTGACGTACCCGATCGCGATCCTGGCGGTGGCGTTCATCGTCACGGCCGTGATCAT
GATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCGGACCTGCCGACGCCCACGCTGGTGGTGATGG
CGATCTCGGAATTCTTCGTTGACTGGTGGTACGTGATCTTCGGCGGCCTGTTCGCTTCCGTTTACTTCTTCTTCCAGGCC
TGGCGCCGTTCGCTGTCCATGCAGCAGGCGATGGACCGGCTGCTGCTGAAGGTGCCCGTGTTCGGCGCCGTGATCAGGAA
GGCCACGATCGCCAGGTGGACGCGCACCCTCGCCACCATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTCGATTCGG
TGGGCGGCGCTGCCGGCAATGCCGTCTACCTGGACGCCACGCGCAAGATCCAGAGCGAAGTGTCGACCGGGGTGAGCCTG
ACGGTGGCGATGCAGAACGTGGAAGTGTTCCCGAACATGGTCACGCAGATGGTGGCGATCGGCGAGGAATCCGGCGCCCT
GGACAGCATGCTGGGCAAGGTCGCCGACTTCTTCGAGGAAGAAGTCGACGAGGCCGTCGCTTCGCTGTCGTCGCTGATGG
AGCCGGCGATCATGGTGATCCTGGGCGTGCTGATCGGCGGGCTGGTGGTGGCCATGTATTTGCCGATCTTCAAGCTGGGG
TCGGTGGTGTAA
ATGGCACACGCGGGCGGCATCAAGGAATCCATCTTTGCCTGGGAAGGCAAGGACAAGACAGGGAAAACCGTGCGCGGCGA
ACTGCGCGCGGGCGGCGAGGCGGTCGTCAACGTGACGCTGCGCCGGCAGGGCATCATGGTCACCAAGGTCAAGAAAAAGG
TGTACCGCTCCGGCAAGAAGGTCACCGACAAGGACATCACGCTGTTCACCCGCCAGCTGGCGACGATGATGAAGGCCGGC
GTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGGCACGCCAACCCGGCCGTGTCGAAACTGGTGATGGACCTGCG
CGCGGACATCGAGACCGGCACCAGCCTGAATGGCGCGTTTCGCAAGTTCCCGCTGTATTTCGACCCGCTGTTCTGCAACC
TGGTGGGCGCCGGCGAACAGGCTGGCATCCTGGAAGACCTGCTGACGCGCCTGGCGATCTACAAGGAAAAGACGCTGGCG
ATGAAAGCCAAGATCAAGTCGGCGCTGACGTACCCGATCGCGATCCTGGCGGTGGCGTTCATCGTCACGGCCGTGATCAT
GATCTGGGTGGTGCCGGCCTTCAAGGAAGTGTTCACCAGCTTCGGCGCGGACCTGCCGACGCCCACGCTGGTGGTGATGG
CGATCTCGGAATTCTTCGTTGACTGGTGGTACGTGATCTTCGGCGGCCTGTTCGCTTCCGTTTACTTCTTCTTCCAGGCC
TGGCGCCGTTCGCTGTCCATGCAGCAGGCGATGGACCGGCTGCTGCTGAAGGTGCCCGTGTTCGGCGCCGTGATCAGGAA
GGCCACGATCGCCAGGTGGACGCGCACCCTCGCCACCATGTTCGCCGCCGGCGTGCCGCTGGTCGAGGCGCTCGATTCGG
TGGGCGGCGCTGCCGGCAATGCCGTCTACCTGGACGCCACGCGCAAGATCCAGAGCGAAGTGTCGACCGGGGTGAGCCTG
ACGGTGGCGATGCAGAACGTGGAAGTGTTCCCGAACATGGTCACGCAGATGGTGGCGATCGGCGAGGAATCCGGCGCCCT
GGACAGCATGCTGGGCAAGGTCGCCGACTTCTTCGAGGAAGAAGTCGACGAGGCCGTCGCTTCGCTGTCGTCGCTGATGG
AGCCGGCGATCATGGTGATCCTGGGCGTGCTGATCGGCGGGCTGGTGGTGGCCATGTATTTGCCGATCTTCAAGCTGGGG
TCGGTGGTGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
56.5 |
99.256 |
0.561 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.303 |
98.263 |
0.543 |
| pilG | Neisseria gonorrhoeae MS11 |
50.856 |
100 |
0.516 |
| pilC | Acinetobacter baumannii D1279779 |
52.141 |
98.511 |
0.514 |
| pilG | Neisseria meningitidis 44/76-A |
50.367 |
100 |
0.511 |
| pilC | Acinetobacter baylyi ADP1 |
51.759 |
98.759 |
0.511 |
| pilC | Vibrio campbellii strain DS40M4 |
40.351 |
99.007 |
0.4 |
| pilC | Vibrio cholerae strain A1552 |
40.302 |
98.511 |
0.397 |
| pilC | Thermus thermophilus HB27 |
36.591 |
99.007 |
0.362 |