Detailed information NTG0361647

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FCL38_RS25770
• Genome accession: NZ_CP040017
• Coordinates: 6109916..6110791 (-)
• Length: 291 a.a.
• NCBI ID: WP_137316247.1
• Uniprot ID: A0A4P8HY39
• Organism: Pseudoduganella umbonata strain DSMZ 26121
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 6104916..6115791

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FCL38_RS25740 (FCL38_25740)	argJ	6105491..6106726 (+)	1236	WP_137316241.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
FCL38_RS25745 (FCL38_25745)	-	6106759..6107640 (+)	882	WP_371861436.1	ATP-binding protein	-
FCL38_RS25750 (FCL38_25750)	-	6107637..6108032 (+)	396	WP_137316243.1	NUDIX domain-containing protein	-
FCL38_RS25755 (FCL38_25755)	yacG	6108270..6108449 (-)	180	WP_137316244.1	DNA gyrase inhibitor YacG	-
FCL38_RS25760 (FCL38_25760)	zapD	6108462..6109217 (-)	756	WP_137316245.1	cell division protein ZapD	-
FCL38_RS25765 (FCL38_25765)	coaE	6109291..6109914 (-)	624	WP_137316246.1	dephospho-CoA kinase	-
FCL38_RS25770 (FCL38_25770)	pilD	6109916..6110791 (-)	876	WP_137316247.1	A24 family peptidase	Machinery gene
FCL38_RS25775 (FCL38_25775)	-	6111022..6111453 (+)	432	WP_137316248.1	DUF2231 domain-containing protein	-
FCL38_RS25780 (FCL38_25780)	-	6111450..6112769 (+)	1320	WP_371861437.1	sorbosone dehydrogenase family protein	-
FCL38_RS25785 (FCL38_25785)	-	6113049..6114233 (+)	1185	WP_137316249.1	alpha/beta fold hydrolase	-
FCL38_RS25790 (FCL38_25790)	pilC	6114309..6115520 (-)	1212	WP_137316250.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 291 a.a.
• Molecular weight: 31320.22 Da
• Isoelectric Point: 8.0176

>NTDB_id=361647 FCL38_RS25770 WP_137316247.1 6109916..6110791(-) (pilD) [Pseudoduganella umbonata strain DSMZ 26121]
MLEQLFLFSPPATLPAALIAAIFGLLVGSFLNVVIYRVPKMMQRESDNYVASESGLPLPHTDRFNLMVPRSACPHCGHQI
TALENIPVVSWLALRGKCSRCKAPISARYPVIEALTGALSAALVWQFGSGWTGLATLLFAYLLIAMTFIDADTRLLPDDL
TYPLLWAGLLVNLNGTFVPLADAVIGAAAGYLCLWSIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWMMLPTIILLSSVV
GAVVGIGLIVFARRGRDNPIPFGPYLAAAGMIALLFGPQIAAFTERFLGVA

Nucleotide

• Length: 876 bp

>NTDB_id=361647 FCL38_RS25770 WP_137316247.1 6109916..6110791(-) (pilD) [Pseudoduganella umbonata strain DSMZ 26121]
ATGCTCGAGCAACTCTTCCTCTTTTCACCGCCCGCCACCCTCCCCGCCGCGCTGATCGCCGCCATTTTCGGCCTGCTGGT
CGGCAGCTTCCTGAACGTCGTCATCTACCGCGTGCCGAAGATGATGCAGCGCGAGTCCGACAACTACGTGGCCAGCGAAT
CGGGCCTGCCGCTGCCGCACACGGACCGCTTCAACCTGATGGTGCCGCGCTCGGCCTGCCCGCATTGCGGCCACCAGATC
ACGGCGCTGGAAAACATCCCCGTCGTCAGCTGGCTGGCGCTGCGTGGCAAGTGCAGCCGGTGCAAGGCGCCGATCTCGGC
ACGCTATCCGGTCATCGAGGCGCTGACGGGCGCGCTGTCCGCGGCGCTGGTCTGGCAGTTCGGCAGCGGCTGGACCGGCC
TGGCCACGCTGCTGTTCGCCTACCTGCTGATCGCGATGACGTTCATCGATGCCGATACCAGGCTGCTGCCGGACGACCTG
ACGTATCCGCTGCTGTGGGCCGGCCTGCTGGTGAACCTGAACGGCACGTTCGTGCCGCTGGCGGACGCGGTGATCGGCGC
GGCCGCCGGCTACCTGTGCCTGTGGTCCATCTATTGGGCATTCAAGCTGCTCACCGGGAAGGAAGGCATGGGCTACGGCG
ACTTCAAGCTGCTGGCCGCGCTGGGCGCGTGGCTGGGCTGGATGATGCTGCCGACGATCATCCTGCTGTCCTCGGTCGTG
GGAGCGGTGGTCGGCATCGGCCTGATCGTCTTTGCCAGGCGGGGGCGCGACAACCCGATCCCGTTCGGTCCCTACCTCGC
CGCCGCGGGCATGATCGCGCTGCTGTTCGGGCCGCAGATCGCCGCGTTCACGGAGCGGTTCCTGGGGGTGGCCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

• Type IV leader peptidase family (Peptidase_A24) (138-246)

3D structure

• AlphaFold DB: A0A4P8HY39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.551	91.753	0.546
pilD	Vibrio campbellii strain DS40M4	56.716	92.096	0.522
pilD	Neisseria gonorrhoeae MS11	52.734	87.973	0.464
pilD	Acinetobacter baumannii D1279779	50.566	91.065	0.46
pilD	Acinetobacter nosocomialis M2	49.434	91.065	0.45