Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   FAH67_RS07865 Genome accession   NZ_CP039886
Coordinates   1532010..1533251 (+) Length   413 a.a.
NCBI ID   WP_115287641.1    Uniprot ID   -
Organism   Neisseria flavescens strain ATCC 13120     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1527010..1538251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAH67_RS07850 (FAH67_07850) - 1528024..1528782 (+) 759 WP_003680277.1 nucleotidyltransferase domain-containing protein -
  FAH67_RS07855 (FAH67_07855) - 1528797..1529858 (+) 1062 WP_003680278.1 nucleotidyltransferase domain-containing protein -
  FAH67_RS07860 (FAH67_07860) pilF 1530251..1531930 (+) 1680 WP_115287640.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FAH67_RS07865 (FAH67_07865) pilG 1532010..1533251 (+) 1242 WP_115287641.1 type II secretion system F family protein Machinery gene
  FAH67_RS07870 (FAH67_07870) pilD 1533253..1534140 (+) 888 WP_003682471.1 A24 family peptidase Machinery gene
  FAH67_RS07875 (FAH67_07875) coaE 1534140..1534760 (+) 621 WP_003682473.1 dephospho-CoA kinase -
  FAH67_RS07880 (FAH67_07880) yacG 1534757..1534939 (+) 183 WP_003682475.1 DNA gyrase inhibitor YacG -
  FAH67_RS07885 (FAH67_07885) glyQ 1535021..1535920 (+) 900 WP_003682476.1 glycine--tRNA ligase subunit alpha -
  FAH67_RS07890 (FAH67_07890) lspA 1536071..1536577 (+) 507 WP_112890684.1 signal peptidase II -
  FAH67_RS07895 (FAH67_07895) ispH 1536591..1537559 (+) 969 WP_039864405.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45925.94 Da        Isoelectric Point: 9.8677

>NTDB_id=360907 FAH67_RS07865 WP_115287641.1 1532010..1533251(+) (pilG) [Neisseria flavescens strain ATCC 13120]
MAQAEQKRSLFGSRSKGKRFTFEGKNTETERLVRGEVVAKDEEEVRKKLQRRGIRPLRISKVKTARKRRITQEDITVFTR
QLATMMKAGLPLMQAFEIVARGHSNPSMTEMLTQIRSDVEQGSALGKSFSKYPKYFDRFYCNLVSAGESGGVLESLLDKL
AVYKEKTQAIKKKVKTALTYPIAIIVVAIALIFIMMMFVLPAFKEVYANMGAELPSLTQLVMSLSDLFVDYGWIMIILLI
ASAFGLYKLHEKSPTFQKRIDALILRLPVFGTIVRKATIARWARTTSTLFAAGVPLVEVLDSVAGASGNILYEEATQDIR
AKVAQGLSLTFSMQSTDMFPNMVIQMAAIGEESGSLDDMLNKAAEFYEDEVDNSVSQLSHLMEPIIMVVLGSLIGILLTA
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=360907 FAH67_RS07865 WP_115287641.1 1532010..1533251(+) (pilG) [Neisseria flavescens strain ATCC 13120]
ATGGCTCAAGCAGAGCAAAAAAGAAGTCTGTTCGGCTCAAGAAGCAAAGGCAAGCGTTTTACATTTGAAGGAAAAAATAC
CGAGACCGAACGTCTTGTCCGTGGTGAAGTAGTTGCCAAAGACGAAGAAGAAGTACGCAAAAAACTCCAACGCAGAGGCA
TTCGTCCTTTGCGTATCAGCAAAGTTAAAACCGCACGCAAACGCCGTATTACCCAAGAAGACATTACAGTGTTCACCCGC
CAACTGGCAACGATGATGAAGGCAGGCTTACCCCTGATGCAGGCTTTTGAAATCGTTGCGCGCGGCCACTCCAATCCGAG
CATGACCGAAATGCTGACGCAGATTCGCTCCGATGTCGAACAAGGCAGCGCATTGGGTAAATCGTTCTCCAAATATCCAA
AATATTTCGACCGCTTTTATTGCAATCTGGTCAGCGCAGGCGAGTCCGGCGGCGTATTGGAAAGCCTATTGGACAAACTG
GCTGTCTATAAAGAAAAAACCCAAGCCATTAAGAAAAAAGTTAAAACCGCACTGACCTACCCGATTGCCATTATCGTGGT
GGCGATTGCGCTTATCTTCATCATGATGATGTTTGTACTGCCTGCCTTTAAAGAAGTTTATGCCAATATGGGGGCAGAGC
TGCCAAGCCTTACCCAACTTGTCATGAGCTTATCCGATTTATTCGTCGACTATGGCTGGATTATGATCATCCTTTTGATT
GCTTCTGCCTTCGGCCTGTACAAACTCCATGAAAAATCGCCTACCTTCCAAAAACGAATCGATGCTTTGATTTTGAGACT
CCCTGTTTTTGGCACCATCGTCCGTAAAGCGACCATTGCCCGTTGGGCGCGTACGACTTCCACACTCTTCGCAGCCGGCG
TTCCTTTGGTGGAAGTATTAGATTCAGTTGCAGGCGCATCCGGCAATATTCTCTATGAAGAAGCTACTCAAGACATCCGC
GCCAAGGTAGCACAAGGCCTGTCGCTGACATTCAGTATGCAAAGTACGGATATGTTCCCCAATATGGTGATCCAAATGGC
GGCCATCGGCGAAGAGTCAGGCTCTTTGGACGATATGCTGAACAAAGCCGCCGAATTCTACGAAGATGAAGTAGACAACT
CCGTCTCCCAATTGTCTCACTTGATGGAGCCTATCATCATGGTGGTATTGGGCTCACTCATCGGTATCTTGCTGACTGCC
ATGTATCTGCCGTTGTTTAACTTGGGTAATGTCGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.287

97.821

0.697
  pilG Neisseria meningitidis 44/76-A

70.545

97.821

0.69
  pilC Acinetobacter baumannii D1279779

46.734

96.368

0.45
  pilC Pseudomonas stutzeri DSM 10701

46.25

96.852

0.448
  pilC Legionella pneumophila strain ERS1305867

46.599

96.126

0.448
  pilC Acinetobacter baylyi ADP1

45.729

96.368

0.441
  pilC Vibrio cholerae strain A1552

39.5

96.852

0.383
  pilC Thermus thermophilus HB27

38.107

94.673

0.361

Multiple sequence alignment