Detailed information NTG0360908

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FAH67_RS07870
• Genome accession: NZ_CP039886
• Coordinates: 1533253..1534140 (+)
• Length: 295 a.a.
• NCBI ID: WP_003682471.1
• Uniprot ID: C0ER45
• Organism: Neisseria flavescens strain ATCC 13120
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1528253..1539140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FAH67_RS07855 (FAH67_07855)	-	1528797..1529858 (+)	1062	WP_003680278.1	nucleotidyltransferase domain-containing protein	-
FAH67_RS07860 (FAH67_07860)	pilF	1530251..1531930 (+)	1680	WP_115287640.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FAH67_RS07865 (FAH67_07865)	pilG	1532010..1533251 (+)	1242	WP_115287641.1	type II secretion system F family protein	Machinery gene
FAH67_RS07870 (FAH67_07870)	pilD	1533253..1534140 (+)	888	WP_003682471.1	A24 family peptidase	Machinery gene
FAH67_RS07875 (FAH67_07875)	coaE	1534140..1534760 (+)	621	WP_003682473.1	dephospho-CoA kinase	-
FAH67_RS07880 (FAH67_07880)	yacG	1534757..1534939 (+)	183	WP_003682475.1	DNA gyrase inhibitor YacG	-
FAH67_RS07885 (FAH67_07885)	glyQ	1535021..1535920 (+)	900	WP_003682476.1	glycine--tRNA ligase subunit alpha	-
FAH67_RS07890 (FAH67_07890)	lspA	1536071..1536577 (+)	507	WP_112890684.1	signal peptidase II	-
FAH67_RS07895 (FAH67_07895)	ispH	1536591..1537559 (+)	969	WP_039864405.1	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	-
FAH67_RS07900 (FAH67_07900)	ftsZ	1537679..1538878 (-)	1200	WP_003682480.1	cell division protein FtsZ	-

Sequence

Protein

• Length: 295 a.a.
• Molecular weight: 32272.44 Da
• Isoelectric Point: 8.3156

>NTDB_id=360908 FAH67_RS07870 WP_003682471.1 1533253..1534140(+) (pilD) [Neisseria flavescens strain ATCC 13120]
MLDSIYSAIDVLSVLAPFAIPLAVILGLLIGSFLNVVIYRTPIMMEREWTQFSKEHLGIELTDEEKQPFNLRKPDSRCPK
CKSPVKPWQNIPILSYVLLGGKCHSCKTAIGIRYPLIELLTGVLFGIVAWQYGWSWATIGGLILTAILIALTFIDADTQY
LPDSLTQPLIWIGLLFNLNDTFVSLHSAVWGAIAGYMSLYTLCAVYKLLTGKIGMGNGDFKLLAALGAWLGVGILPVLVF
MAALVGLVGALIARVSKGQYFAFGPSLAVAGWIILVANAPITQLVQWWLVQSGFR

Nucleotide

• Length: 888 bp

>NTDB_id=360908 FAH67_RS07870 WP_003682471.1 1533253..1534140(+) (pilD) [Neisseria flavescens strain ATCC 13120]
ATGCTTGATAGTATTTACTCTGCCATCGACGTCCTCTCCGTTCTTGCGCCATTCGCTATTCCTTTAGCCGTTATTTTGGG
ATTGCTGATTGGCAGCTTTCTGAACGTTGTCATTTATCGTACACCGATAATGATGGAACGCGAATGGACACAATTTTCTA
AAGAGCATTTGGGCATCGAGCTGACAGATGAAGAAAAACAGCCATTTAATCTGCGCAAACCGGATTCACGCTGCCCAAAA
TGCAAAAGCCCAGTCAAACCTTGGCAAAACATCCCCATCCTCAGCTATGTTTTACTGGGCGGGAAATGCCACTCCTGCAA
AACCGCGATCGGCATACGCTATCCGCTGATCGAGCTACTGACAGGCGTCTTATTCGGTATTGTCGCATGGCAATACGGCT
GGTCATGGGCGACTATTGGCGGATTAATTTTGACTGCCATACTGATTGCGCTGACCTTTATCGATGCCGATACACAATAT
TTGCCCGACAGCCTGACTCAGCCCCTAATCTGGATCGGCCTGCTGTTTAATCTGAATGACACATTCGTGTCCCTGCATTC
AGCCGTTTGGGGCGCAATCGCAGGCTATATGAGCCTTTATACTTTATGCGCCGTCTATAAACTTCTGACCGGTAAAATCG
GCATGGGCAATGGCGACTTCAAACTTTTGGCCGCGCTTGGTGCATGGCTGGGTGTAGGAATTTTGCCTGTTCTGGTATTC
ATGGCTGCCTTAGTCGGACTGGTGGGCGCACTCATTGCCCGCGTCAGTAAAGGTCAATATTTTGCTTTTGGTCCCAGCCT
TGCTGTGGCAGGATGGATTATTTTGGTTGCCAATGCACCTATTACCCAACTGGTACAATGGTGGCTCGTACAATCAGGAT
TCCGATAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (25-132)

• Type IV leader peptidase family (Peptidase_A24) (142-249)

3D structure

• AlphaFold DB: C0ER45

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	71.071	94.915	0.675
pilD	Vibrio cholerae strain A1552	48.276	88.475	0.427
pilD	Vibrio campbellii strain DS40M4	45.421	92.542	0.42
pilD	Acinetobacter baumannii D1279779	47.012	85.085	0.4
pilD	Acinetobacter nosocomialis M2	47.012	85.085	0.4