Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FBQ74_RS04495 Genome accession   NZ_CP039852
Coordinates   1029391..1030602 (-) Length   403 a.a.
NCBI ID   WP_139755531.1    Uniprot ID   A0A5B7YAS7
Organism   Salinimonas iocasae strain KX18D6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024391..1035602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBQ74_RS04465 (FBQ74_04465) mutT 1025384..1025770 (+) 387 WP_139757875.1 8-oxo-dGTP diphosphatase MutT -
  FBQ74_RS04470 (FBQ74_04470) - 1025849..1026715 (-) 867 WP_139755526.1 aspartoacylase -
  FBQ74_RS04475 (FBQ74_04475) yacG 1026728..1026958 (-) 231 WP_139755527.1 DNA gyrase inhibitor YacG -
  FBQ74_RS04480 (FBQ74_04480) zapD 1027005..1027757 (-) 753 WP_139755528.1 cell division protein ZapD -
  FBQ74_RS04485 (FBQ74_04485) coaE 1027826..1028458 (-) 633 WP_139755529.1 dephospho-CoA kinase -
  FBQ74_RS04490 (FBQ74_04490) pilD 1028443..1029315 (-) 873 WP_139755530.1 A24 family peptidase Machinery gene
  FBQ74_RS04495 (FBQ74_04495) pilC 1029391..1030602 (-) 1212 WP_139755531.1 type II secretion system F family protein Machinery gene
  FBQ74_RS04500 (FBQ74_04500) - 1030660..1031088 (-) 429 WP_139755532.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  FBQ74_RS04505 (FBQ74_04505) nadC 1031317..1032192 (-) 876 WP_139755533.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FBQ74_RS04510 (FBQ74_04510) - 1032213..1032722 (-) 510 WP_139755534.1 TIGR02281 family clan AA aspartic protease -
  FBQ74_RS04515 (FBQ74_04515) ampD 1032833..1033369 (+) 537 WP_139755535.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FBQ74_RS04520 (FBQ74_04520) - 1033673..1034419 (+) 747 WP_139755536.1 GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43488.92 Da        Isoelectric Point: 9.7718

>NTDB_id=360773 FBQ74_RS04495 WP_139755531.1 1029391..1030602(-) (pilC) [Salinimonas iocasae strain KX18D6]
MSRAAVVFDYQGKDKQGANRKGEISAASVLEAKNLLRRQGISAQKVKKRQKSLFSGREKKINAADISVVSRQISTMLGAG
VTLLQSLEMIAQGTSKPGMRRLLSSIADEVRAGTPLSTALRKHPLYFDDLYCDLVETGEQSGSLENIYDRIATYKEKAEA
LKSKVKKAMFYPIAVLVVAFIVTTILLVFVVPQFEEIFSSFGAELPAFTQFVLGISRFVQDFGIFIGMGIVGAGFMFVRA
HRKSKALRDRVDATVLKIPVVGEILQKAAVARFTRTLSTTFSAGVPLIGALDSAAGASGNAVYRDAILFIKKEVAGGLQM
NTAMRTTGVFPDMVTQMVAIGEESGAVDDMLSKVASIYEAEVDDMVDGLTSLIEPMIMAVLGVVIGGLIVAMYLPIFQMG
NVV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=360773 FBQ74_RS04495 WP_139755531.1 1029391..1030602(-) (pilC) [Salinimonas iocasae strain KX18D6]
ATGTCCAGAGCCGCAGTCGTTTTTGATTATCAAGGTAAAGATAAACAAGGTGCTAATCGTAAAGGTGAGATATCAGCTGC
AAGTGTGCTTGAAGCAAAGAATCTCTTGAGAAGGCAGGGCATATCAGCTCAGAAAGTCAAAAAACGGCAAAAGTCTCTTT
TTAGTGGCAGAGAAAAAAAAATCAATGCCGCCGACATTTCGGTAGTTTCAAGACAAATTTCTACCATGCTTGGTGCTGGC
GTTACCTTACTACAATCTTTGGAAATGATAGCACAAGGGACTAGCAAACCAGGAATGAGAAGACTTTTGTCTTCTATTGC
CGATGAAGTCCGCGCAGGAACTCCATTATCTACAGCATTACGCAAACACCCCCTGTATTTTGATGACCTGTATTGTGATT
TGGTAGAAACCGGTGAGCAGTCCGGTTCACTTGAAAATATCTACGATCGTATTGCCACCTATAAAGAAAAAGCAGAAGCA
CTAAAGTCCAAAGTTAAAAAAGCGATGTTCTACCCTATCGCCGTTTTAGTCGTTGCTTTTATTGTTACAACAATTCTTTT
GGTCTTTGTAGTGCCTCAGTTTGAAGAAATTTTCAGTAGCTTTGGGGCCGAACTGCCTGCTTTCACTCAGTTTGTATTAG
GTATTTCCCGGTTTGTGCAGGATTTCGGGATATTCATTGGCATGGGTATTGTTGGTGCCGGCTTTATGTTTGTACGTGCC
CACCGCAAGTCTAAAGCGCTGCGTGACCGAGTTGATGCTACTGTTCTAAAGATACCGGTAGTCGGCGAGATCCTGCAGAA
AGCCGCCGTTGCGCGCTTTACCCGTACACTATCAACAACATTCAGTGCCGGTGTTCCGCTTATCGGCGCACTTGATTCAG
CAGCAGGCGCGTCAGGCAATGCCGTATACCGCGATGCAATTCTTTTTATTAAAAAAGAAGTGGCCGGCGGCTTACAAATG
AACACTGCCATGCGCACAACTGGCGTCTTTCCGGATATGGTGACTCAAATGGTGGCCATTGGTGAAGAGTCCGGTGCGGT
AGATGATATGCTTAGCAAAGTAGCCAGCATCTACGAGGCCGAGGTTGATGATATGGTTGACGGTCTGACCAGCCTTATCG
AGCCTATGATTATGGCGGTACTTGGTGTCGTAATCGGCGGCCTGATTGTGGCAATGTATCTGCCTATCTTCCAAATGGGG
AACGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(70-192)

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B7YAS7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.95

98.511

0.591
  pilC Acinetobacter baylyi ADP1

52.882

99.007

0.524
  pilC Legionella pneumophila strain ERS1305867

50.746

99.752

0.506
  pilC Acinetobacter baumannii D1279779

50.882

98.511

0.501
  pilC Vibrio cholerae strain A1552

43.687

98.263

0.429
  pilC Vibrio campbellii strain DS40M4

43.182

98.263

0.424
  pilG Neisseria gonorrhoeae MS11

43.896

95.533

0.419
  pilG Neisseria meningitidis 44/76-A

43.603

95.037

0.414
  pilC Thermus thermophilus HB27

38.346

99.007

0.38

Multiple sequence alignment