Detailed information NTG0360772

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FBQ74_RS04490
• Genome accession: NZ_CP039852
• Coordinates: 1028443..1029315 (-)
• Length: 290 a.a.
• NCBI ID: WP_139755530.1
• Uniprot ID: A0A5B7YAY2
• Organism: Salinimonas iocasae strain KX18D6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1023443..1034315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FBQ74_RS04465 (FBQ74_04465)	mutT	1025384..1025770 (+)	387	WP_139757875.1	8-oxo-dGTP diphosphatase MutT	-
FBQ74_RS04470 (FBQ74_04470)	-	1025849..1026715 (-)	867	WP_139755526.1	aspartoacylase	-
FBQ74_RS04475 (FBQ74_04475)	yacG	1026728..1026958 (-)	231	WP_139755527.1	DNA gyrase inhibitor YacG	-
FBQ74_RS04480 (FBQ74_04480)	zapD	1027005..1027757 (-)	753	WP_139755528.1	cell division protein ZapD	-
FBQ74_RS04485 (FBQ74_04485)	coaE	1027826..1028458 (-)	633	WP_139755529.1	dephospho-CoA kinase	-
FBQ74_RS04490 (FBQ74_04490)	pilD	1028443..1029315 (-)	873	WP_139755530.1	A24 family peptidase	Machinery gene
FBQ74_RS04495 (FBQ74_04495)	pilC	1029391..1030602 (-)	1212	WP_139755531.1	type II secretion system F family protein	Machinery gene
FBQ74_RS04500 (FBQ74_04500)	-	1030660..1031088 (-)	429	WP_139755532.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
FBQ74_RS04505 (FBQ74_04505)	nadC	1031317..1032192 (-)	876	WP_139755533.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FBQ74_RS04510 (FBQ74_04510)	-	1032213..1032722 (-)	510	WP_139755534.1	TIGR02281 family clan AA aspartic protease	-
FBQ74_RS04515 (FBQ74_04515)	ampD	1032833..1033369 (+)	537	WP_139755535.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31858.88 Da
• Isoelectric Point: 5.9861

>NTDB_id=360772 FBQ74_RS04490 WP_139755530.1 1028443..1029315(-) (pilD) [Salinimonas iocasae strain KX18D6]
MNTVVELSAQSPFFFLFVVFVTSLMIGSFLNVVIHRLPIMMERGFKAEYEAYVSEEEIKPAETYNLMKPDSTCPSCGHRI
RAWENIPVLSYLLLKGKCAGCGTAISVRYPCVELATALFSALAAWHFGPGMQAVAAVIVVWFLVPLVMIDLDHMLLPDQL
TLPLLWFGLLLSLDTVFVDPATAIIGAAAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAALGAFTGWQGLPVIIILSSLV
GAIIGLLIHFSRKQSGDLAIPFGPYLAVAGFLTLLYKQPIIDAYLQWITP

Nucleotide

• Length: 873 bp

>NTDB_id=360772 FBQ74_RS04490 WP_139755530.1 1028443..1029315(-) (pilD) [Salinimonas iocasae strain KX18D6]
ATGAACACAGTCGTTGAACTTAGTGCACAAAGCCCTTTCTTTTTTCTTTTCGTTGTCTTTGTGACAAGTTTAATGATTGG
CAGTTTTTTAAACGTTGTTATTCATCGTCTTCCCATCATGATGGAACGCGGCTTTAAAGCAGAATATGAAGCGTATGTCA
GTGAGGAAGAGATAAAGCCCGCTGAGACGTATAATCTGATGAAGCCAGACAGTACCTGTCCATCCTGCGGGCATCGCATT
CGCGCATGGGAAAATATTCCTGTTCTCAGTTATCTACTTTTAAAAGGTAAATGCGCCGGCTGTGGCACTGCAATTTCAGT
GCGTTACCCTTGCGTAGAACTTGCCACTGCATTATTCAGTGCTCTGGCGGCCTGGCACTTTGGCCCAGGCATGCAGGCTG
TAGCTGCGGTCATAGTCGTTTGGTTCCTGGTCCCACTGGTGATGATAGACCTGGACCATATGCTTCTACCGGATCAGTTA
ACTCTTCCCCTGTTATGGTTTGGCTTATTGCTAAGTCTGGACACTGTATTCGTTGACCCTGCCACAGCTATTATTGGGGC
GGCAGCCGGCTATCTGAGTCTTTGGTCTGTATACTGGCTGTTTAAACTGATTACCGGTAAGGAAGGTATGGGGTATGGTG
ACTTTAAATTGCTCGCAGCGCTGGGCGCTTTTACAGGCTGGCAAGGCTTACCGGTTATCATCATTCTGTCTTCGCTAGTT
GGCGCGATCATCGGTCTACTTATACATTTTTCCCGTAAGCAGAGCGGCGACCTGGCCATTCCGTTTGGCCCTTACCTCGC
AGTTGCCGGATTCCTGACTTTGCTGTACAAACAGCCTATTATTGATGCTTATCTACAATGGATAACGCCTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

• Type IV leader peptidase family (Peptidase_A24) (138-246)

3D structure

• AlphaFold DB: A0A5B7YAY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.901	97.241	0.524
pilD	Vibrio campbellii strain DS40M4	54.745	94.483	0.517
pilD	Acinetobacter baumannii D1279779	46.154	98.621	0.455
pilD	Neisseria gonorrhoeae MS11	45.486	99.31	0.452
pilD	Acinetobacter nosocomialis M2	45.804	98.621	0.452