Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FAZ30_RS08545 Genome accession   NZ_CP039731
Coordinates   1834208..1835428 (+) Length   406 a.a.
NCBI ID   WP_124645436.1    Uniprot ID   -
Organism   Aquitalea aquatilis strain THG-DN7.12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1829208..1840428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FAZ30_RS08530 - 1829447..1830847 (-) 1401 WP_124645433.1 deoxyribodipyrimidine photo-lyase -
  FAZ30_RS08535 - 1831189..1832262 (+) 1074 WP_124645434.1 porin -
  FAZ30_RS08540 pilF 1832496..1834190 (+) 1695 WP_205676668.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FAZ30_RS08545 pilC 1834208..1835428 (+) 1221 WP_124645436.1 type II secretion system F family protein Machinery gene
  FAZ30_RS08550 pilD 1835431..1836300 (+) 870 WP_124645437.1 A24 family peptidase Machinery gene
  FAZ30_RS08555 coaE 1836290..1836901 (+) 612 WP_124645438.1 dephospho-CoA kinase -
  FAZ30_RS08560 zapD 1836941..1837699 (+) 759 WP_059284846.1 cell division protein ZapD -
  FAZ30_RS08565 yacG 1837703..1837900 (+) 198 WP_103524355.1 DNA gyrase inhibitor YacG -
  FAZ30_RS08570 - 1837966..1839207 (-) 1242 WP_124645439.1 N-acetylmuramoyl-L-alanine amidase -
  FAZ30_RS08575 tsaE 1839168..1839653 (-) 486 WP_233578663.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44766.63 Da        Isoelectric Point: 9.9325

>NTDB_id=360544 FAZ30_RS08545 WP_124645436.1 1834208..1835428(+) (pilC) [Aquitalea aquatilis strain THG-DN7.12]
MATVAKKTNPGFIWEWEGKDRSGKVIRGELRAETEAVAKTQLRRQGINVLKVKRRRSGFGRKITEKDITLFTRQLSTMMR
AGVPLLQAFDITAKGHSNPAVTKMLLEVRADVETGLSLAEAFRKKPLYFDKLFCNLIAAGETGGVLDSLLDKLATYKEKV
MAIKGKIKSAMIYPTAIIATAFIITAVIMIYVIPAFKDLFSSFGADLPAPTLVVIWLSDFFVHWWWLIFGSIFGGIFSFF
YAFKRTPKLQEQFDRILLKLPVLGDIIRKATIARWSRTLSTLFAAGVPLVEALDSVGGASGNQVYSEATKLIQNDVSAGS
SLSYSMQRTGLFPNMVLQMTSIGEESGSLDQMLDKIADFYEEEVDNAVASLSSLLEPAIMVILGVLIGGLVIAMYMPIFK
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=360544 FAZ30_RS08545 WP_124645436.1 1834208..1835428(+) (pilC) [Aquitalea aquatilis strain THG-DN7.12]
ATGGCGACCGTGGCGAAAAAGACAAATCCGGGGTTTATCTGGGAGTGGGAAGGCAAGGACCGGTCCGGCAAGGTCATCCG
TGGCGAGCTGCGTGCGGAAACCGAGGCTGTTGCCAAGACGCAATTGCGGCGGCAGGGGATCAATGTACTCAAGGTAAAGC
GCCGGCGCAGCGGTTTTGGTCGCAAGATCACCGAAAAAGACATCACGCTGTTTACCCGTCAGCTCTCCACCATGATGCGA
GCTGGCGTGCCCTTGCTGCAGGCTTTTGATATCACGGCCAAGGGGCACAGTAATCCCGCCGTCACCAAGATGCTGCTGGA
GGTCCGTGCTGATGTGGAGACGGGTCTGTCACTGGCGGAGGCCTTCCGCAAGAAGCCGCTGTATTTCGACAAATTATTCT
GCAATCTGATCGCGGCTGGCGAAACCGGTGGTGTGCTGGACTCCTTGCTCGACAAGCTGGCCACCTACAAAGAAAAAGTG
ATGGCGATCAAGGGTAAGATCAAATCCGCCATGATCTACCCGACGGCGATTATTGCCACGGCCTTCATTATTACTGCAGT
GATCATGATTTACGTGATCCCGGCGTTCAAAGACTTGTTCTCGAGCTTTGGTGCTGACCTGCCAGCACCGACGCTAGTCG
TAATCTGGTTGTCAGATTTCTTCGTTCACTGGTGGTGGCTGATTTTCGGTTCCATTTTCGGTGGCATTTTTTCTTTTTTC
TATGCCTTCAAGCGCACGCCCAAGCTGCAAGAGCAGTTTGATCGCATCTTGCTGAAGCTGCCCGTGCTTGGCGACATCAT
CCGCAAAGCGACCATTGCCCGCTGGTCTCGTACCCTGTCCACCTTGTTTGCTGCCGGTGTGCCGCTGGTCGAAGCGCTGG
ATTCGGTTGGTGGTGCCTCGGGTAATCAGGTGTATAGCGAAGCGACCAAGCTGATTCAGAATGATGTCAGTGCCGGTTCC
AGCCTCAGCTATTCCATGCAGCGCACCGGGCTGTTTCCCAATATGGTGTTGCAGATGACTTCGATTGGTGAGGAGTCCGG
CTCGCTTGACCAGATGCTCGACAAGATTGCCGATTTCTATGAAGAAGAAGTCGACAACGCGGTGGCCTCGCTGTCCAGTC
TGCTGGAGCCGGCCATCATGGTGATTCTGGGTGTACTGATTGGCGGTCTGGTCATCGCCATGTACATGCCGATTTTCAAG
ATGGGTCAGGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.465

99.507

0.532
  pilC Pseudomonas stutzeri DSM 10701

53.086

99.754

0.53
  pilG Neisseria meningitidis 44/76-A

53.5

98.522

0.527
  pilG Neisseria gonorrhoeae MS11

53.634

98.276

0.527
  pilC Acinetobacter baylyi ADP1

50

100

0.5
  pilC Acinetobacter baumannii D1279779

49.512

100

0.5
  pilC Vibrio campbellii strain DS40M4

40.302

97.783

0.394
  pilC Vibrio cholerae strain A1552

36.675

100

0.369

Multiple sequence alignment