Detailed information NTG0360545

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FAZ30_RS08550
• Genome accession: NZ_CP039731
• Coordinates: 1835431..1836300 (+)
• Length: 289 a.a.
• NCBI ID: WP_124645437.1
• Uniprot ID: -
• Organism: Aquitalea aquatilis strain THG-DN7.12
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1830431..1841300

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FAZ30_RS08535	-	1831189..1832262 (+)	1074	WP_124645434.1	porin	-
FAZ30_RS08540	pilF	1832496..1834190 (+)	1695	WP_205676668.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FAZ30_RS08545	pilC	1834208..1835428 (+)	1221	WP_124645436.1	type II secretion system F family protein	Machinery gene
FAZ30_RS08550	pilD	1835431..1836300 (+)	870	WP_124645437.1	A24 family peptidase	Machinery gene
FAZ30_RS08555	coaE	1836290..1836901 (+)	612	WP_124645438.1	dephospho-CoA kinase	-
FAZ30_RS08560	zapD	1836941..1837699 (+)	759	WP_059284846.1	cell division protein ZapD	-
FAZ30_RS08565	yacG	1837703..1837900 (+)	198	WP_103524355.1	DNA gyrase inhibitor YacG	-
FAZ30_RS08570	-	1837966..1839207 (-)	1242	WP_124645439.1	N-acetylmuramoyl-L-alanine amidase	-
FAZ30_RS08575	tsaE	1839168..1839653 (-)	486	WP_233578663.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
FAZ30_RS08580	queG	1839684..1840751 (+)	1068	WP_246043423.1	tRNA epoxyqueuosine(34) reductase QueG	-
FAZ30_RS08585	-	1840795..1841259 (-)	465	WP_124645442.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31449.51 Da
• Isoelectric Point: 7.2951

>NTDB_id=360545 FAZ30_RS08550 WP_124645437.1 1835431..1836300(+) (pilD) [Aquitalea aquatilis strain THG-DN7.12]
MTEMASVFAGNAGLLVVVVLLFGLLVGSFLNVVIHRLPKMMELGWQQECDAYLGREQTVQPKYNLLVPASHCPVCRQEVR
PWQNIPLLSYALLRGRCHGCSTAISLRYPAVELLTGGLFALLAWHYGWSVQLPAYLALTAVLVALAFIDADTQLLPDSLT
LPLLWAGLLFNLLTGTVALSDAVLGAMAGYLSLWLVYWLFKLATGKEGMGYGDFKLLAAFGAWLGWSMLPLIILLSSLVG
AVVGIVLILLARMGRGQALPFGPYLAAAGWIALLWGQDIVAWYLGMYAH

Nucleotide

• Length: 870 bp

>NTDB_id=360545 FAZ30_RS08550 WP_124645437.1 1835431..1836300(+) (pilD) [Aquitalea aquatilis strain THG-DN7.12]
ATGACTGAAATGGCAAGTGTATTCGCTGGCAATGCCGGCTTGCTGGTGGTGGTGGTATTGCTGTTTGGTCTGCTGGTCGG
CAGCTTTCTCAATGTGGTGATTCATCGTTTGCCCAAGATGATGGAGCTGGGTTGGCAGCAGGAGTGTGATGCTTACCTGG
GACGGGAGCAGACGGTGCAGCCCAAGTACAACCTGCTGGTGCCCGCATCACATTGCCCGGTGTGCCGGCAGGAAGTCCGC
CCCTGGCAGAATATTCCCTTGTTGAGTTATGCCTTGCTGCGTGGCCGCTGTCATGGTTGCAGTACGGCGATCAGCCTGCG
TTATCCGGCTGTTGAGTTGCTGACCGGAGGCCTGTTTGCGCTGCTGGCCTGGCATTATGGCTGGAGTGTGCAGTTGCCTG
CTTACCTGGCGCTGACTGCGGTGCTGGTGGCACTCGCGTTCATTGATGCCGATACCCAGTTGCTGCCGGACAGCTTGACG
CTGCCCTTGTTGTGGGCAGGCCTGCTGTTCAATCTACTGACCGGTACTGTTGCACTGTCCGATGCTGTGCTGGGCGCGAT
GGCTGGCTATCTGAGCTTGTGGCTGGTGTACTGGCTGTTCAAGCTGGCTACCGGCAAGGAGGGCATGGGTTATGGTGATT
TCAAATTGCTGGCAGCCTTTGGTGCCTGGCTGGGTTGGAGCATGTTGCCGCTTATCATCCTGCTGTCTTCTCTAGTGGGG
GCGGTGGTCGGTATCGTACTGATCCTGCTGGCACGCATGGGCCGTGGCCAGGCCTTGCCATTTGGCCCATATCTGGCCGC
TGCCGGCTGGATTGCCTTGCTATGGGGTCAAGACATTGTTGCTTGGTATCTAGGCATGTATGCCCATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.204	94.81	0.533
pilD	Vibrio campbellii strain DS40M4	53.901	97.578	0.526
pilD	Acinetobacter nosocomialis M2	52.265	99.308	0.519
pilD	Acinetobacter baumannii D1279779	51.916	99.308	0.516
pilD	Neisseria gonorrhoeae MS11	55.019	93.08	0.512