Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FAZ90_RS02785 | Genome accession | NZ_CP039700 |
| Coordinates | 543250..543663 (-) | Length | 137 a.a. |
| NCBI ID | WP_016787825.1 | Uniprot ID | A0A7Z1S206 |
| Organism | Vibrio cyclitrophicus strain ECSMB14105 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 538250..548663
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FAZ90_RS02765 (FAZ90_02765) | coaE | 538768..539382 (-) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
| FAZ90_RS02770 (FAZ90_02770) | pilD | 539385..540254 (-) | 870 | WP_016768203.1 | prepilin peptidase | Machinery gene |
| FAZ90_RS02775 (FAZ90_02775) | pilC | 540321..541550 (-) | 1230 | WP_016768204.1 | type II secretion system F family protein | Machinery gene |
| FAZ90_RS02780 (FAZ90_02780) | pilB | 541565..543250 (-) | 1686 | WP_016787826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FAZ90_RS02785 (FAZ90_02785) | pilA | 543250..543663 (-) | 414 | WP_016787825.1 | pilin | Machinery gene |
| FAZ90_RS02790 (FAZ90_02790) | nadC | 543918..544808 (-) | 891 | WP_016783773.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FAZ90_RS02795 (FAZ90_02795) | ampD | 544892..545491 (+) | 600 | WP_016783774.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FAZ90_RS02805 (FAZ90_02805) | pdhR | 545973..546734 (+) | 762 | WP_016768209.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 14087.81 Da Isoelectric Point: 4.9689
>NTDB_id=360176 FAZ90_RS02785 WP_016787825.1 543250..543663(-) (pilA) [Vibrio cyclitrophicus strain ECSMB14105]
MNNKNRRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEASSGLATLKALVTTAELHVQEEGSFPTTAAQLGTTE
NANNLGTTTLAASGLVFTFGSNSSISGATVTMTRDASTGWGCELSANAGTLDGCANP
MNNKNRRTNQKGFTLIELMIVVAIIGVLSAIAVPAYQNYVTRSEASSGLATLKALVTTAELHVQEEGSFPTTAAQLGTTE
NANNLGTTTLAASGLVFTFGSNSSISGATVTMTRDASTGWGCELSANAGTLDGCANP
Nucleotide
Download Length: 414 bp
>NTDB_id=360176 FAZ90_RS02785 WP_016787825.1 543250..543663(-) (pilA) [Vibrio cyclitrophicus strain ECSMB14105]
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGTTTCACGCTGATTGAATTGATGATCGTCGTAGCGATTATTGGTGT
GCTGTCAGCGATTGCTGTTCCTGCATACCAAAACTATGTCACGCGTAGTGAAGCCTCTTCAGGTTTAGCTACGTTAAAAG
CTCTAGTTACAACTGCAGAATTACACGTTCAAGAGGAAGGTAGTTTTCCAACAACCGCTGCACAATTAGGAACAACAGAG
AATGCAAATAACTTAGGGACAACCACGCTTGCAGCAAGTGGCCTTGTTTTTACATTTGGTTCAAATAGCTCAATATCAGG
AGCAACCGTAACAATGACTCGAGATGCAAGTACAGGCTGGGGATGTGAGTTATCGGCTAATGCCGGAACTTTAGACGGCT
GTGCTAACCCTTAA
ATGAATAACAAAAATAGAAGAACAAATCAGAAAGGTTTCACGCTGATTGAATTGATGATCGTCGTAGCGATTATTGGTGT
GCTGTCAGCGATTGCTGTTCCTGCATACCAAAACTATGTCACGCGTAGTGAAGCCTCTTCAGGTTTAGCTACGTTAAAAG
CTCTAGTTACAACTGCAGAATTACACGTTCAAGAGGAAGGTAGTTTTCCAACAACCGCTGCACAATTAGGAACAACAGAG
AATGCAAATAACTTAGGGACAACCACGCTTGCAGCAAGTGGCCTTGTTTTTACATTTGGTTCAAATAGCTCAATATCAGG
AGCAACCGTAACAATGACTCGAGATGCAAGTACAGGCTGGGGATGTGAGTTATCGGCTAATGCCGGAACTTTAGACGGCT
GTGCTAACCCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
58.394 |
100 |
0.584 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
45.865 |
97.08 |
0.445 |
| pilA | Vibrio cholerae strain A1552 |
45.865 |
97.08 |
0.445 |
| pilA | Vibrio cholerae C6706 |
45.865 |
97.08 |
0.445 |
| pilA | Pseudomonas aeruginosa PAK |
45.455 |
96.35 |
0.438 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.129 |
100 |
0.387 |
| pilA2 | Legionella pneumophila str. Paris |
40.323 |
90.511 |
0.365 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.323 |
90.511 |
0.365 |