Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FAZ90_RS02770 | Genome accession | NZ_CP039700 |
| Coordinates | 539385..540254 (-) | Length | 289 a.a. |
| NCBI ID | WP_016768203.1 | Uniprot ID | A0AAN0LNW9 |
| Organism | Vibrio cyclitrophicus strain ECSMB14105 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 534385..545254
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FAZ90_RS02735 (FAZ90_02735) | rpsP | 535429..535677 (+) | 249 | WP_004410028.1 | 30S ribosomal protein S16 | - |
| FAZ90_RS02740 (FAZ90_02740) | rimM | 535702..536256 (+) | 555 | WP_016768202.1 | ribosome maturation factor RimM | - |
| FAZ90_RS02745 (FAZ90_02745) | trmD | 536283..537023 (+) | 741 | WP_010435912.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FAZ90_RS02750 (FAZ90_02750) | rplS | 537083..537436 (+) | 354 | WP_004735514.1 | 50S ribosomal protein L19 | - |
| FAZ90_RS02755 (FAZ90_02755) | yacG | 537722..537919 (-) | 198 | WP_010435916.1 | DNA gyrase inhibitor YacG | - |
| FAZ90_RS02760 (FAZ90_02760) | zapD | 538001..538741 (-) | 741 | WP_010435917.1 | cell division protein ZapD | - |
| FAZ90_RS02765 (FAZ90_02765) | coaE | 538768..539382 (-) | 615 | WP_010435920.1 | dephospho-CoA kinase | - |
| FAZ90_RS02770 (FAZ90_02770) | pilD | 539385..540254 (-) | 870 | WP_016768203.1 | prepilin peptidase | Machinery gene |
| FAZ90_RS02775 (FAZ90_02775) | pilC | 540321..541550 (-) | 1230 | WP_016768204.1 | type II secretion system F family protein | Machinery gene |
| FAZ90_RS02780 (FAZ90_02780) | pilB | 541565..543250 (-) | 1686 | WP_016787826.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FAZ90_RS02785 (FAZ90_02785) | pilA | 543250..543663 (-) | 414 | WP_016787825.1 | pilin | Machinery gene |
| FAZ90_RS02790 (FAZ90_02790) | nadC | 543918..544808 (-) | 891 | WP_016783773.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32578.79 Da Isoelectric Point: 7.9444
>NTDB_id=360173 FAZ90_RS02770 WP_016768203.1 539385..540254(-) (pilD) [Vibrio cyclitrophicus strain ECSMB14105]
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
MEVFHYYPWLFPVLAFIFSLLIGSFLNVVIHRLPIMMEREWQQECSEYFSQYKIPAPEGKFNLSIPRSTCPKCKTQLRAI
DNIPVLSWLFLKGKCRSCTNPISARYPLVELLTAILCTVVASHFGFSYYAIALIFFTFALITATFIDLDTMLLPDQITLP
LVWSGIALALFNISPVSLQDSVVGAMAGYLALWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQHLPMIILLSSLVGL
VFGLIQLRLKQQGIDKAFPFGPYLAIAGWVSLMWGNDIMGWYFTSVLGI
Nucleotide
Download Length: 870 bp
>NTDB_id=360173 FAZ90_RS02770 WP_016768203.1 539385..540254(-) (pilD) [Vibrio cyclitrophicus strain ECSMB14105]
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA
ATGGAAGTATTTCACTACTATCCTTGGCTATTCCCCGTATTAGCTTTCATTTTTAGCCTCCTTATCGGTAGCTTCCTCAA
TGTGGTCATACATCGTTTACCGATTATGATGGAGCGAGAGTGGCAACAAGAGTGCTCGGAATATTTCTCTCAATATAAAA
TTCCAGCACCAGAAGGAAAGTTTAATCTCAGCATTCCTCGCTCTACTTGCCCTAAGTGTAAAACCCAACTGAGAGCAATC
GACAACATCCCTGTATTAAGCTGGTTATTCCTAAAAGGTAAGTGCCGCAGTTGTACTAACCCCATCAGCGCCCGTTATCC
CTTGGTCGAACTGCTTACAGCGATACTTTGTACCGTAGTCGCTAGCCACTTTGGTTTCAGTTATTACGCGATTGCTCTGA
TATTTTTCACCTTTGCTTTGATTACCGCGACCTTTATCGATCTCGATACTATGTTACTGCCGGATCAAATTACCTTACCT
TTAGTTTGGTCTGGTATCGCTTTGGCCTTATTTAATATCAGCCCGGTATCACTGCAAGATTCCGTCGTTGGAGCGATGGC
TGGTTACCTAGCACTTTGGTCTGTTTACTGGCTGTTCAAGCTGCTCACTGGCAAAGAAGGGATGGGGTACGGTGATTTTA
AATTGCTAGCGGCATTAGGGGCATGGCTTGGTTGGCAACATCTACCAATGATCATCCTTCTGTCATCGCTAGTGGGCCTT
GTGTTCGGATTGATTCAACTGCGACTGAAGCAACAAGGCATAGACAAAGCTTTCCCATTTGGGCCCTATCTAGCGATTGC
TGGTTGGGTAAGTCTGATGTGGGGTAACGACATCATGGGTTGGTATTTCACTTCTGTACTAGGAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
73.702 |
100 |
0.737 |
| pilD | Vibrio cholerae strain A1552 |
69.097 |
99.654 |
0.689 |
| pilD | Acinetobacter nosocomialis M2 |
51.311 |
92.388 |
0.474 |
| pilD | Acinetobacter baumannii D1279779 |
50.936 |
92.388 |
0.471 |
| pilD | Neisseria gonorrhoeae MS11 |
46.739 |
95.502 |
0.446 |