Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E4167_RS03500 Genome accession   NZ_CP039631
Coordinates   769384..770592 (+) Length   402 a.a.
NCBI ID   WP_046488093.1    Uniprot ID   A0A4P7Y3C3
Organism   Pseudomonas veronii strain Pvy     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 764384..775592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4167_RS03475 (E4167_03625) nadC 765878..766726 (+) 849 WP_155677278.1 carboxylating nicotinate-nucleotide diphosphorylase -
  E4167_RS03480 (E4167_03630) - 766770..767075 (-) 306 WP_017845466.1 DUF6388 family protein -
  E4167_RS03490 (E4167_03640) - 767324..768733 (-) 1410 WP_046488098.1 O-antigen ligase family protein -
  E4167_RS03495 (E4167_03645) - 768769..769182 (-) 414 WP_046488095.1 pilin -
  E4167_RS03500 (E4167_03650) pilC 769384..770592 (+) 1209 WP_046488093.1 type II secretion system F family protein Machinery gene
  E4167_RS03505 (E4167_03655) pilD 770589..771455 (+) 867 WP_046384730.1 A24 family peptidase Machinery gene
  E4167_RS03510 (E4167_03660) coaE 771452..772075 (+) 624 WP_017845471.1 dephospho-CoA kinase -
  E4167_RS03515 (E4167_03665) yacG 772072..772272 (+) 201 WP_017845472.1 DNA gyrase inhibitor YacG -
  E4167_RS03520 (E4167_03670) - 772269..772484 (-) 216 WP_003171680.1 hypothetical protein -
  E4167_RS03525 (E4167_03675) - 772561..773253 (-) 693 WP_155677279.1 energy-coupling factor ABC transporter permease -
  E4167_RS03530 (E4167_03680) - 773250..773717 (-) 468 WP_046488087.1 hypothetical protein -
  E4167_RS03535 (E4167_03685) - 773817..774446 (+) 630 WP_017845475.1 DUF1780 domain-containing protein -
  E4167_RS03540 (E4167_03690) - 774538..774711 (+) 174 WP_016976295.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43430.68 Da        Isoelectric Point: 9.8307

>NTDB_id=360097 E4167_RS03500 WP_046488093.1 769384..770592(+) (pilC) [Pseudomonas veronii strain Pvy]
MTNAATTYAWEGINRQGRRVSGQTVSHDLARVKAQLRQQGICPGRVRKQSAGLPSLAAPIKPADIALFTRQLATLLKAGI
ALLQAFDVISEGFDNRHMYRLVKGLKQEIGAGNTLASALRKQPRYFDDLYCNLVAAGEQAGALETLLERVADHLEKSERL
KARIKKAMTYPIAVIVVASLVSSLLLIHVVPQFQNLFASVDSELPGFTLYVIALSEFLQQAWWMLALSLGAGGLGLRRAY
RVSPGFRHWLDAGLLKAPLAGTLLKKSAVARYARTLSTTFAAGVPLVQALDSVAAAASNQLFKQAIEHMRHDVSTGMPLN
RAMAASGLFPGMAIQMTAIGEESGTLEHMLEKVASHYESDVDTLVDQLTSLMEPLIMVVLGGIVGALVIALYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=360097 E4167_RS03500 WP_046488093.1 769384..770592(+) (pilC) [Pseudomonas veronii strain Pvy]
ATGACCAACGCTGCCACGACATACGCCTGGGAAGGCATCAACCGCCAGGGACGCAGGGTGTCCGGGCAAACCGTCAGCCA
CGACCTCGCGCGGGTCAAGGCACAACTGCGCCAGCAAGGGATTTGCCCTGGCCGCGTGCGCAAACAATCCGCCGGCCTGC
CAAGCCTCGCTGCGCCGATCAAACCGGCGGACATTGCCCTGTTCACCCGCCAACTGGCGACACTGCTGAAGGCCGGCATT
GCCTTGCTGCAAGCCTTCGACGTGATCAGCGAAGGCTTCGACAACCGCCACATGTACAGGCTGGTAAAAGGCCTGAAACA
GGAGATCGGCGCCGGGAATACCCTGGCGTCGGCACTGCGCAAACAGCCGCGCTACTTCGATGACCTGTACTGCAACCTGG
TGGCAGCGGGTGAGCAGGCCGGCGCCCTGGAAACCCTTCTGGAACGGGTGGCGGATCACCTGGAAAAGAGCGAACGGCTC
AAGGCCCGGATCAAGAAGGCCATGACCTACCCCATCGCGGTCATCGTGGTCGCCAGCCTTGTCAGCAGTCTCTTGCTGAT
CCATGTGGTGCCGCAATTCCAGAACCTGTTCGCCAGCGTGGACAGCGAGTTGCCCGGTTTTACTCTGTACGTGATTGCCT
TGTCCGAGTTCCTGCAACAAGCCTGGTGGATGCTGGCGCTCAGCCTGGGCGCGGGAGGTCTGGGGTTGCGCCGGGCCTAT
CGCGTATCGCCCGGTTTTCGTCATTGGCTGGATGCCGGTTTGTTGAAAGCGCCCCTGGCGGGCACACTGCTGAAAAAGTC
GGCAGTCGCCCGCTACGCACGCACGCTTTCAACTACGTTCGCGGCCGGAGTGCCGTTGGTGCAGGCCCTGGATTCAGTGG
CGGCCGCTGCCAGCAACCAGCTATTCAAACAGGCTATCGAACATATGCGTCACGATGTATCCACAGGCATGCCGCTGAAT
CGGGCCATGGCCGCCAGCGGTCTGTTCCCTGGCATGGCGATCCAGATGACGGCGATTGGTGAAGAATCCGGCACCCTGGA
GCACATGCTGGAAAAAGTCGCGAGCCACTATGAGTCGGACGTCGACACGCTGGTCGACCAACTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTGCTCGGCGGGATTGTCGGCGCTTTGGTAATCGCCCTGTACCTGCCGGTCTTCCAACTCGGTACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7Y3C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.343

98.507

0.585
  pilC Acinetobacter baylyi ADP1

50.873

99.751

0.507
  pilC Acinetobacter baumannii D1279779

49.242

98.507

0.485
  pilC Legionella pneumophila strain ERS1305867

47.727

98.507

0.47
  pilC Vibrio cholerae strain A1552

39.186

97.761

0.383
  pilC Thermus thermophilus HB27

37.688

99.005

0.373
  pilG Neisseria gonorrhoeae MS11

39.108

94.776

0.371
  pilC Vibrio campbellii strain DS40M4

37.659

97.761

0.368
  pilG Neisseria meningitidis 44/76-A

38.32

94.776

0.363

Multiple sequence alignment