Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | E4167_RS03505 | Genome accession | NZ_CP039631 |
| Coordinates | 770589..771455 (+) | Length | 288 a.a. |
| NCBI ID | WP_046384730.1 | Uniprot ID | A0A4P7Y2K7 |
| Organism | Pseudomonas veronii strain Pvy | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 765589..776455
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4167_RS03475 (E4167_03625) | nadC | 765878..766726 (+) | 849 | WP_155677278.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| E4167_RS03480 (E4167_03630) | - | 766770..767075 (-) | 306 | WP_017845466.1 | DUF6388 family protein | - |
| E4167_RS03490 (E4167_03640) | - | 767324..768733 (-) | 1410 | WP_046488098.1 | O-antigen ligase family protein | - |
| E4167_RS03495 (E4167_03645) | - | 768769..769182 (-) | 414 | WP_046488095.1 | pilin | - |
| E4167_RS03500 (E4167_03650) | pilC | 769384..770592 (+) | 1209 | WP_046488093.1 | type II secretion system F family protein | Machinery gene |
| E4167_RS03505 (E4167_03655) | pilD | 770589..771455 (+) | 867 | WP_046384730.1 | A24 family peptidase | Machinery gene |
| E4167_RS03510 (E4167_03660) | coaE | 771452..772075 (+) | 624 | WP_017845471.1 | dephospho-CoA kinase | - |
| E4167_RS03515 (E4167_03665) | yacG | 772072..772272 (+) | 201 | WP_017845472.1 | DNA gyrase inhibitor YacG | - |
| E4167_RS03520 (E4167_03670) | - | 772269..772484 (-) | 216 | WP_003171680.1 | hypothetical protein | - |
| E4167_RS03525 (E4167_03675) | - | 772561..773253 (-) | 693 | WP_155677279.1 | energy-coupling factor ABC transporter permease | - |
| E4167_RS03530 (E4167_03680) | - | 773250..773717 (-) | 468 | WP_046488087.1 | hypothetical protein | - |
| E4167_RS03535 (E4167_03685) | - | 773817..774446 (+) | 630 | WP_017845475.1 | DUF1780 domain-containing protein | - |
| E4167_RS03540 (E4167_03690) | - | 774538..774711 (+) | 174 | WP_016976295.1 | DUF3094 family protein | - |
| E4167_RS03545 (E4167_03695) | - | 774772..776073 (+) | 1302 | WP_155677280.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 288 a.a. Molecular weight: 31857.15 Da Isoelectric Point: 7.9058
>NTDB_id=360098 E4167_RS03505 WP_046384730.1 770589..771455(+) (pilD) [Pseudomonas veronii strain Pvy]
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCAHCREAISARYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK
MSLLLSQQPWAFVAMAMVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEVLGLPGDPVGPRYNLMQPNSCCPHCNQPIRPW
ENIPLLSYLMLRGRCAHCREAISARYPLTELACGLISAVVAWHFGFGWQAGAVMLLSWGLLAMSLIDVDHQLLPDVLVLP
LLWLGLMLNSVELLVPLPDALWGAVIGYMSLWTVFWLFKLATGKDGMGYGDFKLLALLGAWGGWQILPMTLLMSSLVGVC
GGLILLRRSKIQAATPMPFGPYLAIAGWIAVLWGGQITDFYLQSVGFK
Nucleotide
Download Length: 867 bp
>NTDB_id=360098 E4167_RS03505 WP_046384730.1 770589..771455(+) (pilD) [Pseudomonas veronii strain Pvy]
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCGCACTGCAATCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTACTCAGCTACCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTGCGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGACGTGTTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
TTGAGCCTGCTGTTGAGCCAGCAGCCGTGGGCCTTTGTCGCCATGGCAATGGTGCTGGGCTTGATCGTGGGCAGTTTCCT
CAACGTGCTGGTGTGGCGCCTGCCGAAAATGCTTGAACGGGAATGGCGCGCACAGGCCCATGAAGTGCTCGGTTTGCCCG
GCGACCCCGTCGGGCCGAGATACAACCTGATGCAGCCCAATTCCTGCTGCCCGCACTGCAATCAGCCGATTCGGCCGTGG
GAAAACATCCCGCTACTCAGCTACCTGATGCTCCGGGGCCGCTGTGCCCATTGCCGCGAAGCGATCAGTGCGCGTTATCC
CTTGACCGAACTGGCGTGCGGGTTGATCTCGGCCGTGGTGGCCTGGCATTTTGGCTTTGGCTGGCAAGCGGGCGCAGTGA
TGCTGTTGAGCTGGGGCTTGTTGGCGATGAGCCTGATCGACGTCGACCACCAACTGCTGCCCGACGTGTTGGTCCTGCCG
CTGTTGTGGCTGGGGCTGATGCTTAACAGCGTCGAGCTGCTGGTGCCCCTGCCCGATGCACTGTGGGGTGCGGTGATCGG
CTACATGAGCCTGTGGACGGTGTTCTGGCTGTTCAAGCTGGCCACCGGCAAGGACGGCATGGGCTACGGCGACTTCAAGT
TGTTGGCGCTGCTCGGCGCCTGGGGTGGCTGGCAAATCCTGCCGATGACGCTGCTGATGTCATCGCTGGTGGGCGTGTGC
GGCGGGCTGATCCTGCTGCGTCGGAGCAAGATCCAGGCGGCCACGCCGATGCCGTTTGGTCCCTATCTGGCAATTGCCGG
CTGGATTGCCGTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.396 |
96.528 |
0.535 |
| pilD | Vibrio campbellii strain DS40M4 |
50.538 |
96.875 |
0.49 |
| pilD | Acinetobacter baumannii D1279779 |
49.27 |
95.139 |
0.469 |
| pilD | Acinetobacter nosocomialis M2 |
48.905 |
95.139 |
0.465 |
| pilD | Neisseria gonorrhoeae MS11 |
48.148 |
93.75 |
0.451 |