Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E8E00_RS11390 Genome accession   NZ_CP039516
Coordinates   2465915..2467129 (+) Length   404 a.a.
NCBI ID   WP_096630811.1    Uniprot ID   A0A2A4GJX6
Organism   Salinivibrio sp. YCSC6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2460915..2472129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8E00_RS11370 (E8E00_11370) - 2461463..2462455 (-) 993 WP_136588386.1 ABC transporter substrate-binding protein -
  E8E00_RS11375 (E8E00_11375) nadC 2462618..2463526 (+) 909 WP_096630817.1 carboxylating nicotinate-nucleotide diphosphorylase -
  E8E00_RS17345 (E8E00_11380) - 2463775..2464215 (+) 441 WP_069586613.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  E8E00_RS11385 (E8E00_11385) pilB 2464223..2465905 (+) 1683 WP_096630814.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E8E00_RS11390 (E8E00_11390) pilC 2465915..2467129 (+) 1215 WP_096630811.1 type II secretion system F family protein Machinery gene
  E8E00_RS11395 (E8E00_11395) pilD 2467194..2468063 (+) 870 WP_096630808.1 A24 family peptidase Machinery gene
  E8E00_RS11400 (E8E00_11400) coaE 2468063..2468677 (+) 615 WP_096630805.1 dephospho-CoA kinase -
  E8E00_RS11405 (E8E00_11405) zapD 2468701..2469441 (+) 741 WP_096630802.1 cell division protein ZapD -
  E8E00_RS11410 (E8E00_11410) yacG 2469446..2469652 (+) 207 WP_069586608.1 DNA gyrase inhibitor YacG -
  E8E00_RS11415 (E8E00_11415) mutT 2469683..2470078 (-) 396 WP_096630799.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 404 a.a.        Molecular weight: 44856.50 Da        Isoelectric Point: 9.8847

>NTDB_id=359445 E8E00_RS11390 WP_096630811.1 2465915..2467129(+) (pilC) [Salinivibrio sp. YCSC6]
MAKPTLFLFHWRQAAAGGDKKGQVFAYTEQDARQQLASQSILPTRIIRRRLSSFQQRRHKAKAADITQFSRDLTTLLESG
IPIVQALNLIALNQVKAEMRLLVRHIRQQLEAGTSLSDALAQASPLFDRFYCDLVATGEQTGQLPQVFARLTLYREKQAQ
LRSKVIKAMIYPSIVISVALGVSAYLLVFVIPKFKHIFDSFGAELPWLTQQVLALSDIVSQHALTITLMMAGLAAAHQLL
QRKNATYHYYYDRWLLRLPVIGEVVSKACIAKFSRTLATTFSAGIPLLSGLQAATKSMTNAYYVHALNAVYQHTATGIPL
HQALRDSDSFPVMVTQMVMIGEESGSLDNMLNRIAQIYEAEVDNTVDNLGKIIEPLLILVLGLLIGGLVVAMYLPIFNLM
SVLG

Nucleotide


Download         Length: 1215 bp        

>NTDB_id=359445 E8E00_RS11390 WP_096630811.1 2465915..2467129(+) (pilC) [Salinivibrio sp. YCSC6]
ATGGCCAAACCCACGCTGTTTCTCTTTCATTGGCGCCAAGCCGCTGCAGGCGGCGACAAAAAAGGCCAGGTGTTCGCCTA
TACCGAGCAGGATGCTCGCCAACAGCTGGCGAGCCAATCGATCTTGCCCACACGCATCATTCGCCGTCGACTATCGAGCT
TTCAGCAGCGCCGTCACAAAGCCAAAGCGGCGGATATCACTCAGTTTTCCCGCGATCTCACCACTCTGCTAGAGTCTGGG
ATCCCTATCGTACAGGCCCTCAACCTCATCGCGCTCAATCAGGTCAAAGCCGAGATGCGCTTGCTGGTGCGTCATATTCG
CCAGCAACTCGAAGCGGGCACCAGTTTAAGCGATGCGTTGGCGCAAGCGAGTCCCTTGTTTGATCGCTTCTACTGCGATC
TGGTCGCAACAGGCGAGCAAACCGGGCAGTTACCACAGGTCTTTGCTCGTTTAACCTTGTATCGTGAAAAGCAGGCGCAG
CTTCGCAGTAAAGTGATTAAAGCCATGATCTATCCCAGCATAGTGATCAGCGTGGCCTTGGGAGTGAGTGCCTATCTGCT
GGTATTCGTGATCCCGAAGTTTAAACATATTTTTGACTCCTTCGGCGCCGAGCTACCTTGGCTGACCCAACAAGTGCTCG
CCTTATCCGACATCGTCAGCCAACACGCATTAACCATCACACTGATGATGGCGGGCCTTGCCGCTGCCCACCAATTGCTA
CAGCGTAAAAACGCGACTTACCACTATTACTATGACCGCTGGCTACTCCGACTGCCCGTCATTGGTGAAGTGGTGAGTAA
AGCCTGCATTGCCAAATTTTCTCGTACCCTCGCCACCACCTTTAGTGCTGGTATCCCGTTACTTTCTGGCTTACAAGCGG
CAACAAAATCCATGACCAACGCTTATTATGTTCACGCGCTTAATGCAGTGTATCAGCACACCGCAACGGGTATTCCACTC
CACCAAGCATTGCGTGACAGCGACAGCTTCCCTGTGATGGTGACCCAAATGGTGATGATTGGCGAAGAGTCGGGCTCACT
CGATAATATGCTCAACCGCATCGCGCAAATCTATGAAGCCGAAGTCGATAACACCGTGGACAACCTCGGTAAAATTATCG
AGCCCCTGTTAATTTTAGTGCTGGGGCTATTGATTGGCGGCTTGGTGGTGGCCATGTATTTACCGATTTTCAATCTGATG
TCCGTTCTTGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A4GJX6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

51.385

98.267

0.505
  pilC Vibrio campbellii strain DS40M4

50

99.505

0.498
  pilG Neisseria meningitidis 44/76-A

40.547

99.505

0.403
  pilG Neisseria gonorrhoeae MS11

39.401

99.257

0.391
  pilC Acinetobacter baylyi ADP1

39.844

95.05

0.379
  pilC Acinetobacter baumannii D1279779

39.74

95.297

0.379
  pilC Legionella pneumophila strain ERS1305867

38.095

98.762

0.376
  pilC Pseudomonas stutzeri DSM 10701

37.28

98.267

0.366

Multiple sequence alignment