Detailed information NTG0359446

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E8E00_RS11395
• Genome accession: NZ_CP039516
• Coordinates: 2467194..2468063 (+)
• Length: 289 a.a.
• NCBI ID: WP_096630808.1
• Uniprot ID: A0A2A4GLK4
• Organism: Salinivibrio sp. YCSC6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2462194..2473063

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E8E00_RS11375 (E8E00_11375)	nadC	2462618..2463526 (+)	909	WP_096630817.1	carboxylating nicotinate-nucleotide diphosphorylase	-
E8E00_RS17345 (E8E00_11380)	-	2463775..2464215 (+)	441	WP_069586613.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E8E00_RS11385 (E8E00_11385)	pilB	2464223..2465905 (+)	1683	WP_096630814.1	type IV-A pilus assembly ATPase PilB	Machinery gene
E8E00_RS11390 (E8E00_11390)	pilC	2465915..2467129 (+)	1215	WP_096630811.1	type II secretion system F family protein	Machinery gene
E8E00_RS11395 (E8E00_11395)	pilD	2467194..2468063 (+)	870	WP_096630808.1	A24 family peptidase	Machinery gene
E8E00_RS11400 (E8E00_11400)	coaE	2468063..2468677 (+)	615	WP_096630805.1	dephospho-CoA kinase	-
E8E00_RS11405 (E8E00_11405)	zapD	2468701..2469441 (+)	741	WP_096630802.1	cell division protein ZapD	-
E8E00_RS11410 (E8E00_11410)	yacG	2469446..2469652 (+)	207	WP_069586608.1	DNA gyrase inhibitor YacG	-
E8E00_RS11415 (E8E00_11415)	mutT	2469683..2470078 (-)	396	WP_096630799.1	8-oxo-dGTP diphosphatase MutT	-
E8E00_RS11420 (E8E00_11420)	secA	2470212..2472935 (-)	2724	WP_077455358.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31935.22 Da
• Isoelectric Point: 7.8458

>NTDB_id=359446 E8E00_RS11395 WP_096630808.1 2467194..2468063(+) (pilD) [Salinivibrio sp. YCSC6]
MLIFSSPLFIVLAGLFGLIIGSFLNVVIARLPIMMARRWRQECLATFPDANIEAPDGQRFDLCLPASHCPACEQTIRWYD
NIPLLSWLALKGRCRHCQHPISKRYPLVELTSAILCMLPAWLFTSPTWAIAVMAASLVLLALTLIDWETLLLPDQLTLPL
MWSGIGLALIGISPVTLSESVIGAMVGYVSLWSLFWAFKLTTGKEGMGYGDFKLFAALGAWLGWQVLPLLILLASLSGAV
IGAILLRRQQQGLQQPFAFGPFIAIAGWVCLLWGDGLLHWYLSQLLGVR

Nucleotide

• Length: 870 bp

>NTDB_id=359446 E8E00_RS11395 WP_096630808.1 2467194..2468063(+) (pilD) [Salinivibrio sp. YCSC6]
ATGTTGATATTCTCATCGCCGTTATTCATCGTTCTTGCCGGCCTATTCGGCCTGATTATCGGTAGCTTTTTAAATGTGGT
CATCGCACGTTTGCCGATCATGATGGCGCGTCGTTGGCGCCAAGAATGCTTAGCCACCTTTCCTGATGCAAACATTGAGG
CCCCCGATGGGCAGCGTTTTGATTTGTGCCTTCCCGCGTCTCACTGTCCGGCCTGTGAGCAAACCATTCGCTGGTATGAC
AATATTCCGCTACTCAGTTGGCTGGCTTTAAAAGGCCGCTGCCGCCATTGCCAACATCCCATCAGTAAACGCTACCCATT
GGTGGAGCTGACCAGCGCGATACTTTGCATGCTCCCCGCATGGCTTTTCACCTCCCCGACGTGGGCCATCGCGGTGATGG
CGGCTAGTTTAGTGTTGTTAGCCTTAACCTTGATTGATTGGGAAACCCTGCTGCTGCCCGATCAACTCACCTTACCCTTG
ATGTGGTCCGGCATCGGCCTTGCGCTGATCGGCATCAGCCCCGTCACCCTCAGTGAGAGTGTCATTGGCGCCATGGTCGG
TTATGTCAGCCTTTGGAGCCTCTTTTGGGCCTTTAAGCTCACCACCGGCAAAGAAGGCATGGGCTATGGCGACTTTAAGC
TCTTTGCCGCCTTGGGGGCGTGGCTGGGATGGCAAGTACTGCCGCTCTTGATCCTGCTGGCCTCATTAAGTGGCGCCGTG
ATTGGCGCGATCCTACTCCGCCGTCAGCAGCAAGGACTGCAGCAACCTTTCGCCTTTGGTCCTTTTATTGCGATCGCCGG
CTGGGTCTGCCTCCTGTGGGGGGATGGCCTGTTACACTGGTATCTTTCACAACTATTGGGAGTGCGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-123)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

3D structure

• AlphaFold DB: A0A2A4GLK4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	60.357	96.886	0.585
pilD	Vibrio campbellii strain DS40M4	56.94	97.232	0.554
pilD	Acinetobacter baumannii D1279779	50.538	96.54	0.488
pilD	Acinetobacter nosocomialis M2	50.538	96.54	0.488
pilD	Neisseria gonorrhoeae MS11	42.657	98.962	0.422