Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GSY65_RS12395 Genome accession   NZ_CP047318
Coordinates   2971998..2972612 (-) Length   204 a.a.
NCBI ID   WP_055519442.1    Uniprot ID   A0ABV3B6L4
Organism   Streptomyces sp. HM190     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2966998..2977612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS12375 - 2968136..2969083 (+) 948 WP_159767381.1 hypothetical protein -
  GSY65_RS12380 - 2969145..2969411 (-) 267 WP_159767382.1 hypothetical protein -
  GSY65_RS12385 clpX 2969587..2970873 (-) 1287 WP_107464051.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GSY65_RS12390 clpP 2971077..2971757 (-) 681 WP_159767383.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GSY65_RS12395 clpP 2971998..2972612 (-) 615 WP_055519442.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GSY65_RS12400 tig 2973046..2974503 (-) 1458 WP_159767384.1 trigger factor -
  GSY65_RS12415 - 2975302..2975496 (-) 195 WP_159767385.1 hypothetical protein -
  GSY65_RS12420 - 2976076..2977269 (+) 1194 WP_159767386.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 21540.39 Da        Isoelectric Point: 4.8122

>NTDB_id=359121 GSY65_RS12395 WP_055519442.1 2971998..2972612(-) (clpP) [Streptomyces sp. HM190]
MPSAAGEPSIGGGLGDHVYNRLLNERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSITAGMAIYDTMQY
IKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSQHTGQSVE
QITRDSDRDRWFDAFEAKEYGLIDDVIATAAGMPGGGGTGAGQA

Nucleotide


Download         Length: 615 bp        

>NTDB_id=359121 GSY65_RS12395 WP_055519442.1 2971998..2972612(-) (clpP) [Streptomyces sp. HM190]
ATGCCCTCCGCCGCCGGCGAACCTTCCATCGGCGGTGGCCTCGGCGACCATGTCTACAACCGGCTGCTCAACGAGCGGAT
CATCTTCCTCGGCCAGCCGGTCGACGACGACATCGCGAACAAGATCACCGCACAGCTGCTGCTCCTTGCCGCCGACCCGG
ACAAGGACATTTACCTGTACATCAACAGCCCGGGCGGTTCGATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC
ATCAAGAACGACGTGGTGACCATCGCCATGGGCCTCGCGGCCTCGATGGGTCAGTTCCTCCTCAGCGCGGGCACCCCCGG
CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTCGCCGGCTCGGCCTCGGACATCA
AGATCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACGTCGCAGCACACCGGCCAGTCGGTCGAG
CAGATCACCCGCGACTCGGACCGCGACCGCTGGTTCGACGCCTTCGAGGCCAAGGAGTACGGCCTCATCGACGACGTCAT
CGCCACGGCGGCCGGCATGCCGGGCGGCGGCGGTACCGGGGCCGGGCAGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(17-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

58.48

83.824

0.49
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.945

89.216

0.49
  clpP Lactococcus lactis subsp. cremoris KW2

53.804

90.196

0.485
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.261

90.196

0.48
  clpP Streptococcus mutans UA159

54.913

84.804

0.466
  clpP Streptococcus pyogenes MGAS315

52.023

84.804

0.441
  clpP Streptococcus pyogenes JRS4

52.023

84.804

0.441
  clpP Streptococcus pneumoniae D39

51.724

85.294

0.441
  clpP Streptococcus pneumoniae Rx1

51.724

85.294

0.441
  clpP Streptococcus pneumoniae R6

51.724

85.294

0.441
  clpP Streptococcus pneumoniae TIGR4

51.724

85.294

0.441
  clpP Streptococcus thermophilus LMG 18311

51.149

85.294

0.436
  clpP Streptococcus thermophilus LMD-9

51.149

85.294

0.436