Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GSY65_RS12390 Genome accession   NZ_CP047318
Coordinates   2971077..2971757 (-) Length   226 a.a.
NCBI ID   WP_159767383.1    Uniprot ID   A0ABW1B5H5
Organism   Streptomyces sp. HM190     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2966077..2976757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GSY65_RS12375 - 2968136..2969083 (+) 948 WP_159767381.1 hypothetical protein -
  GSY65_RS12380 - 2969145..2969411 (-) 267 WP_159767382.1 hypothetical protein -
  GSY65_RS12385 clpX 2969587..2970873 (-) 1287 WP_107464051.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GSY65_RS12390 clpP 2971077..2971757 (-) 681 WP_159767383.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GSY65_RS12395 clpP 2971998..2972612 (-) 615 WP_055519442.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GSY65_RS12400 tig 2973046..2974503 (-) 1458 WP_159767384.1 trigger factor -
  GSY65_RS12415 - 2975302..2975496 (-) 195 WP_159767385.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25060.46 Da        Isoelectric Point: 4.8332

>NTDB_id=359120 GSY65_RS12390 WP_159767383.1 2971077..2971757(-) (clpP) [Streptomyces sp. HM190]
MNDFPGRGLHDRASSQYTGPTAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEEMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSSVR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=359120 GSY65_RS12390 WP_159767383.1 2971077..2971757(-) (clpP) [Streptomyces sp. HM190]
GTGAACGACTTCCCCGGCCGCGGCCTCCACGACCGTGCGAGCTCCCAGTACACCGGCCCGACGGCCGAGTCCCGCTATGT
GATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGCGTCCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCCGCCGCCGCGATCCTGCTGGCCGCCGGTACGCCCG
GCAAGCGCATGGCGCTGCCGAACGCGCGCGTGCTGATCCACCAGCCGTACAGCGAGACCGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTTCGCAGCTGGAGGAGATGCTGGCCAAGCACTCCACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGGCGTACGGCCTGATCGACCAGA
TCATCTCCACGCGGAAGATGAACAACAGCAGCGTCCGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

44.554

89.381

0.398
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.564

89.381

0.389
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385