Detailed information NTG0359119

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GSY65_RS12385
• Genome accession: NZ_CP047318
• Coordinates: 2969587..2970873 (-)
• Length: 428 a.a.
• NCBI ID: WP_107464051.1
• Uniprot ID: A0ABW1B6D2
• Organism: Streptomyces sp. HM190
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2964587..2975873

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GSY65_RS12370	-	2965347..2967998 (-)	2652	WP_159767380.1	valine--tRNA ligase	-
GSY65_RS12375	-	2968136..2969083 (+)	948	WP_159767381.1	hypothetical protein	-
GSY65_RS12380	-	2969145..2969411 (-)	267	WP_159767382.1	hypothetical protein	-
GSY65_RS12385	clpX	2969587..2970873 (-)	1287	WP_107464051.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GSY65_RS12390	clpP	2971077..2971757 (-)	681	WP_159767383.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GSY65_RS12395	clpP	2971998..2972612 (-)	615	WP_055519442.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GSY65_RS12400	tig	2973046..2974503 (-)	1458	WP_159767384.1	trigger factor	-
GSY65_RS12415	-	2975302..2975496 (-)	195	WP_159767385.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46814.58 Da
• Isoelectric Point: 4.7809

>NTDB_id=359119 GSY65_RS12385 WP_107464051.1 2969587..2970873(-) (clpX) [Streptomyces sp. HM190]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEA
AKKALSVAVYNHYKRVQAGENGGGQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGAKGIGFGATIRSKRELESKDQFEDVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILVEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
ADVVHSNVNPTLIPRDARGRGSGEQKTA

Nucleotide

• Length: 1287 bp

>NTDB_id=359119 GSY65_RS12385 WP_107464051.1 2969587..2970873(-) (clpX) [Streptomyces sp. HM190]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGCCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAAGAACTCGCGGAGACCA
GCGAGGTCCGCTGGGAGGAACTCCCGAAGCCCCGCGAGATCTACGAGTTCCTCGAGGGGTACGTGGTCGGCCAGGAGGCC
GCCAAGAAGGCCCTGTCGGTCGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGTGAGAACGGCGGCGGCCAAGGCCG
TGACGACGCGATCGAGTTGGCCAAGTCCAACATCCTTCTCCTCGGCCCCACCGGCTCCGGCAAGACCCTGCTCGCCCAGA
CGCTGGCCCGCATGCTGAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTGGGCGAGGAC
GTCGAGAACATCCTCCTGAAGCTCATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCGCGGAAGAGCGAAAACCCCTCCATCACGCGGGACGTGAGCGGCGAGGGTGTGCAGCAGGCCC
TCCTCAAGATCCTCGAGGGCACGACGGCGTCGGTGCCGCCGCAGGGCGGACGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTCCTGTTCATCGTGGGCGGCGCGTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGGGCGGGCGC
CAAGGGCATCGGCTTCGGCGCGACGATCCGTTCGAAGCGGGAGCTGGAGTCCAAGGACCAGTTCGAGGACGTCATGCCCG
AGGACCTGGTCAAGTTCGGCATGATCCCCGAGTTCATCGGCCGTCTGCCCGTCATCACGTCGGTCCACAACCTGGACCGC
GAGGCGCTCCTGCAGATCCTGGTCGAGCCCCGCAACGCGCTGGTGAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGACTTCGAGCGCGAGGCCCTGGAGGCCATCGCCGACCAGGCCATCCTCCGCCAGACCGGCGCGCGCGGTCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTCATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACG
GCGGACGTGGTCCACTCCAACGTCAACCCGACCCTCATCCCGAGGGACGCGCGGGGGCGGGGCTCGGGCGAGCAGAAGAC
GGCGTAG

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.687	93.925	0.589
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.745	96.028	0.526