Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E8A47_RS10595 Genome accession   NZ_CP039374
Coordinates   2374161..2375393 (-) Length   410 a.a.
NCBI ID   WP_141441160.1    Uniprot ID   -
Organism   Vreelandella titanicae strain ANRCS81     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2369161..2380393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E8A47_RS10560 - 2369204..2369578 (+) 375 WP_022523599.1 histone-like nucleoid-structuring protein, MvaT/MvaU family -
  E8A47_RS10565 - 2369667..2370497 (-) 831 WP_022523598.1 helix-turn-helix transcriptional regulator -
  E8A47_RS10570 - 2370873..2371232 (+) 360 WP_035537408.1 hypothetical protein -
  E8A47_RS10575 - 2371256..2372143 (-) 888 WP_022523596.1 hypothetical protein -
  E8A47_RS10580 yacG 2372183..2372416 (-) 234 WP_022523595.1 DNA gyrase inhibitor YacG -
  E8A47_RS10585 coaE 2372452..2373054 (-) 603 WP_141441161.1 dephospho-CoA kinase -
  E8A47_RS10590 pilD 2373123..2373968 (-) 846 WP_027959304.1 A24 family peptidase Machinery gene
  E8A47_RS10595 pilC 2374161..2375393 (-) 1233 WP_141441160.1 type II secretion system F family protein Machinery gene
  E8A47_RS10600 pilB 2375397..2377145 (-) 1749 WP_089690942.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E8A47_RS10605 - 2377387..2377902 (+) 516 WP_022523590.1 pilin -
  E8A47_RS10610 - 2378011..2378445 (+) 435 WP_141441159.1 anti-virulence regulator CigR family protein -
  E8A47_RS10615 - 2378540..2379361 (+) 822 WP_141441158.1 inositol monophosphatase family protein -
  E8A47_RS24570 - 2379713..2379823 (-) 111 WP_309599316.1 IS66 family transposase zinc-finger binding domain-containing protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44740.66 Da        Isoelectric Point: 10.6296

>NTDB_id=358255 E8A47_RS10595 WP_141441160.1 2374161..2375393(-) (pilC) [Vreelandella titanicae strain ANRCS81]
MAKTARRRQTPAIKLARWKWIGKGPQDRALSGEMIGRSKAEVAAKLTKQNIVIRRISKKGNLGGNGRVNPNDVMVFARQM
ATMVRAGIPLLQALQVVAESLKKPAMVALMQQMISDVSSGSSFSDALNRHPKHFDRLFVNLVSAGEQSGALDQMLDRLAT
YKEKVESLKARVKKALWYPTTVMTIGIAVTMLLLIKVVPEFESMFQSFGAELPALTQLTVNLSGLAQRYWLAALGAVIAA
VLLLRISIQRSPNVAYRMHALLLRLPVIGDIMHKSAIARFSRTLATTFTSGVPLVEGLDTAAGATGNKVYERAVAQTRQD
VATGQQLHFAMRMTNRFPPLAIQMVSIGEEAGSLDVMLNRVADYYEEEVDNKVDALTSLMEPVIIVVLGVLVGGVVVSMY
LPIFDLGAAL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=358255 E8A47_RS10595 WP_141441160.1 2374161..2375393(-) (pilC) [Vreelandella titanicae strain ANRCS81]
ATGGCTAAAACGGCACGTCGACGCCAAACGCCCGCCATCAAGCTAGCGCGCTGGAAATGGATCGGTAAAGGCCCCCAGGA
TAGAGCGCTAAGCGGTGAGATGATTGGCCGCAGTAAAGCCGAAGTAGCCGCTAAACTCACCAAGCAAAATATCGTTATCC
GCCGGATTAGTAAAAAAGGCAACCTAGGCGGCAACGGCCGAGTTAACCCCAACGACGTTATGGTCTTTGCGCGCCAGATG
GCCACAATGGTTCGCGCCGGTATCCCCTTGCTACAGGCGCTTCAAGTGGTGGCAGAGAGCCTCAAAAAACCTGCTATGGT
TGCCCTAATGCAACAGATGATAAGCGATGTATCATCGGGCTCCAGCTTCTCTGATGCATTGAACCGCCACCCCAAACACT
TTGATCGCCTGTTTGTTAACCTAGTCAGCGCCGGCGAGCAGTCAGGTGCGCTGGATCAAATGCTTGATCGTCTTGCGACC
TATAAGGAGAAGGTTGAGTCGCTGAAAGCGCGAGTAAAAAAAGCGCTTTGGTACCCCACCACCGTTATGACGATTGGCAT
TGCTGTGACCATGTTGCTGTTGATTAAAGTGGTGCCTGAATTTGAAAGCATGTTCCAGAGCTTTGGTGCAGAGCTTCCCG
CACTGACCCAGTTGACCGTGAATTTATCCGGGCTTGCCCAGCGTTATTGGCTAGCGGCGCTCGGCGCGGTGATTGCTGCC
GTCCTACTACTCAGAATAAGCATTCAGCGCTCGCCTAATGTCGCTTACCGCATGCACGCTTTGCTGCTTCGGTTACCGGT
CATTGGCGATATCATGCATAAATCCGCCATCGCCCGCTTTTCGCGTACCTTAGCGACTACCTTTACCTCCGGTGTACCGC
TCGTAGAAGGCTTAGATACCGCCGCCGGTGCCACCGGCAATAAAGTGTACGAACGCGCGGTGGCACAAACGCGCCAGGAC
GTAGCCACCGGACAACAGCTACACTTCGCCATGCGGATGACCAACCGCTTTCCCCCCTTGGCAATCCAAATGGTCAGTAT
CGGTGAAGAAGCGGGGTCGCTGGATGTCATGCTTAATCGTGTTGCCGATTACTACGAAGAAGAAGTCGACAATAAGGTCG
ATGCTCTTACCTCGCTCATGGAGCCGGTTATTATTGTAGTACTGGGCGTGCTCGTTGGCGGTGTGGTTGTCTCTATGTAC
TTACCCATTTTCGACTTGGGCGCAGCCCTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

52.073

94.146

0.49
  pilC Acinetobacter baumannii D1279779

51.175

93.415

0.478
  pilC Legionella pneumophila strain ERS1305867

46.798

99.024

0.463
  pilC Pseudomonas stutzeri DSM 10701

47.619

97.317

0.463
  pilC Vibrio cholerae strain A1552

43.243

99.268

0.429
  pilC Vibrio campbellii strain DS40M4

42.506

99.268

0.422
  pilG Neisseria gonorrhoeae MS11

43

97.561

0.42
  pilG Neisseria meningitidis 44/76-A

43

97.561

0.42

Multiple sequence alignment