Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GQY29_RS09825 Genome accession   NZ_CP047191
Coordinates   1873164..1873760 (-) Length   198 a.a.
NCBI ID   WP_014608122.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain EU01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1868164..1878760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GQY29_RS09785 (GQY29_09785) coaE 1868749..1869342 (-) 594 WP_014621355.1 dephospho-CoA kinase -
  GQY29_RS09790 (GQY29_09790) mutM 1869339..1870160 (-) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  GQY29_RS09795 (GQY29_09795) era 1870207..1871106 (-) 900 WP_011680930.1 GTPase Era -
  GQY29_RS10980 (GQY29_09800) - 1871125..1871529 (-) 405 WP_011227008.1 diacylglycerol kinase family protein -
  GQY29_RS09805 (GQY29_09805) ybeY 1871510..1872007 (-) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  GQY29_RS10985 - 1872227..1873023 (-) 797 Protein_1843 PRD domain-containing protein -
  GQY29_RS09825 (GQY29_09825) recR 1873164..1873760 (-) 597 WP_014608122.1 recombination mediator RecR Machinery gene
  GQY29_RS09830 (GQY29_09830) pbp2b 1873870..1875984 (-) 2115 WP_159341105.1 penicillin-binding protein PBP2B -
  GQY29_RS09835 (GQY29_09835) - 1876106..1876942 (-) 837 WP_111679418.1 NAD(P)H-hydrate dehydratase -
  GQY29_RS09840 (GQY29_09840) - 1876946..1877800 (-) 855 WP_111679416.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  GQY29_RS09845 (GQY29_09845) - 1877973..1878164 (-) 192 WP_002950214.1 hypothetical protein -
  GQY29_RS09850 (GQY29_09850) - 1878412..1878624 (-) 213 WP_011680924.1 lysophospholipase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21802.00 Da        Isoelectric Point: 4.5326

>NTDB_id=357947 GQY29_RS09825 WP_014608122.1 1873164..1873760(-) (recR) [Streptococcus thermophilus strain EU01]
MLYPTPIAKLIDSFSKFPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=357947 GQY29_RS09825 WP_014608122.1 1873164..1873760(-) (recR) [Streptococcus thermophilus strain EU01]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAATTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47

Multiple sequence alignment