Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GR131_RS08560 Genome accession   NZ_CP047147
Coordinates   2069629..2070246 (-) Length   205 a.a.
NCBI ID   WP_008411883.1    Uniprot ID   A0ABR4S5V2
Organism   Streptomyces sp. GF20     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2064629..2075246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR131_RS08545 (GR131_08545) - 2066380..2067348 (+) 969 WP_159312199.1 hypothetical protein -
  GR131_RS08550 (GR131_08550) clpX 2067445..2068731 (-) 1287 WP_003948046.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GR131_RS08555 (GR131_08555) clpP 2068890..2069561 (-) 672 WP_023419465.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR131_RS08560 (GR131_08560) clpP 2069629..2070246 (-) 618 WP_008411883.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR131_RS08565 (GR131_08565) tig 2070545..2071942 (-) 1398 WP_159312200.1 trigger factor -
  GR131_RS08580 (GR131_08580) - 2072589..2072783 (-) 195 WP_003948050.1 hypothetical protein -
  GR131_RS08585 (GR131_08585) - 2073557..2074759 (+) 1203 WP_008411881.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21568.44 Da        Isoelectric Point: 4.6747

>NTDB_id=357741 GR131_RS08560 WP_008411883.1 2069629..2070246(-) (clpP) [Streptomyces sp. GF20]
MTNLMPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLASDPDKDINLYINSPGGSISAGMAIYD
TMQFIKNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTG
QSVEQITRDSDRDRWFSADEAKEYGLIDEVIASAANVPGGGGTGA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=357741 GR131_RS08560 WP_008411883.1 2069629..2070246(-) (clpP) [Streptomyces sp. GF20]
GTGACGAATCTGATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCT
CGGTGAGCGGATCATCTTCCTCGGCCAGCCCGTGGACGACGACATCGCCAACAAGATCACCGCGCAGCTGCTGCTCCTTG
CCAGCGACCCTGACAAGGACATCAACCTCTACATCAACAGCCCCGGCGGTTCGATCAGCGCCGGCATGGCGATCTACGAC
ACCATGCAGTTCATCAAGAACGACGTGGTCACCATCGCCATGGGGCTGGCCGCCTCGATGGGCCAGTTCCTGCTGAGCGC
CGGCACCCCCGGCAAGCGCTTCGCCCTGCCGAACGCCGAAATCCTGATCCACCAGCCGTCCGCCGGTCTGGCCGGTTCCG
CCTCGGACATCAAGATCCACGCGGAGCGGCTGCTGCACACCAAGAAGCGGATGGCCGAGCTGACCGCGTTCCACACCGGT
CAGAGCGTCGAGCAGATCACCCGGGACTCGGACCGCGACCGCTGGTTCTCCGCCGACGAGGCCAAGGAGTACGGCCTGAT
CGACGAGGTCATCGCCTCCGCGGCCAACGTGCCCGGCGGCGGCGGCACCGGCGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(20-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.789

92.683

0.517
  clpP Lactococcus lactis subsp. cremoris KW2

53.608

94.634

0.507
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

53.093

94.634

0.502
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.172

84.878

0.468
  clpP Streptococcus mutans UA159

54.913

84.39

0.463
  clpP Streptococcus pneumoniae D39

53.714

85.366

0.459
  clpP Streptococcus pneumoniae Rx1

53.714

85.366

0.459
  clpP Streptococcus pneumoniae R6

53.714

85.366

0.459
  clpP Streptococcus pneumoniae TIGR4

53.714

85.366

0.459
  clpP Streptococcus thermophilus LMG 18311

53.143

85.366

0.454
  clpP Streptococcus thermophilus LMD-9

53.143

85.366

0.454
  clpP Streptococcus pyogenes JRS4

53.757

84.39

0.454
  clpP Streptococcus pyogenes MGAS315

53.757

84.39

0.454