Detailed information NTG0357739

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: GR131_RS08550
• Genome accession: NZ_CP047147
• Coordinates: 2067445..2068731 (-)
• Length: 428 a.a.
• NCBI ID: WP_003948046.1
• Uniprot ID: D6B0D5
• Organism: Streptomyces sp. GF20
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2062445..2073731

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GR131_RS08540 (GR131_08540)	-	2063621..2066242 (-)	2622	WP_008411888.1	valine--tRNA ligase	-
GR131_RS08545 (GR131_08545)	-	2066380..2067348 (+)	969	WP_159312199.1	hypothetical protein	-
GR131_RS08550 (GR131_08550)	clpX	2067445..2068731 (-)	1287	WP_003948046.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
GR131_RS08555 (GR131_08555)	clpP	2068890..2069561 (-)	672	WP_023419465.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GR131_RS08560 (GR131_08560)	clpP	2069629..2070246 (-)	618	WP_008411883.1	ATP-dependent Clp protease proteolytic subunit	Regulator
GR131_RS08565 (GR131_08565)	tig	2070545..2071942 (-)	1398	WP_159312200.1	trigger factor	-
GR131_RS08580 (GR131_08580)	-	2072589..2072783 (-)	195	WP_003948050.1	hypothetical protein	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46941.77 Da
• Isoelectric Point: 4.7788

>NTDB_id=357739 GR131_RS08550 WP_003948046.1 2067445..2068731(-) (clpX) [Streptomyces sp. GF20]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWDELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGQNGAPGGREDAIELGKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKREIEEKDQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
AEVVQSNVNPTLIPRDARGRGNGEQKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=357739 GR131_RS08550 WP_003948046.1 2067445..2068731(-) (clpX) [Streptomyces sp. GF20]
GTGGCACGCATCGGTGACGGCGGCGATCTGCTCAAGTGCTCGTTCTGCGGCAAGAGTCAGAAGCAGGTCAAGAAGCTCAT
CGCAGGCCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAGGAGGAGCTCGCCGAGACCT
CGGAAGTGCGCTGGGACGAACTGCCCAAGCCGCGCGAGATCTACGAGTTCCTGGAGAGCTACGTCGTGGGCCAGGAGCCC
GCGAAGAAGGCGCTCTCCGTCGCGGTGTACAACCACTACAAGCGCGTGCAGGCGGGGCAGAACGGCGCACCCGGCGGGCG
TGAGGACGCCATCGAGCTGGGCAAGTCCAACATCCTGCTGCTGGGCCCGACCGGCTCCGGCAAGACCCTGCTCGCGCAGA
CGCTGGCCCGGATGCTCAACGTGCCGTTCGCCATCGCGGACGCCACGGCGCTGACCGAGGCCGGCTACGTCGGCGAGGAT
GTCGAGAACATCCTCCTCAAGCTCATCCAGGCCGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
TGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGTGACGTCTCCGGCGAGGGCGTGCAGCAGGCGC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCGGTGCCGCCGCAGGGCGGGCGGAAACACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCTCGGGCCTGGAGAAGATCATCGAGTCGCGGGCCGGTGC
AAAGGGCATCGGGTTCGGCGCCACGATCCGCTCCAAGCGGGAGATCGAGGAGAAGGACCAGTTCCAGGAGGTCATGCCCG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTGCCGGTCATCACCTCGGTCCACAACCTCGACCGC
GAGGCGCTCCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGTGT
GGAGCTGGACTTCGAGCGTGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCCAGACCGGCGCCCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTCATGTCGGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACC
GCCGAGGTCGTCCAGTCCAACGTCAACCCGACCCTGATCCCCCGGGACGCCCGGGGCCGGGGGAACGGCGAGCAGAAGTC
GGCCTGA

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (115-312)

3D structure

• AlphaFold DB: D6B0D5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.779	94.159	0.591
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.258	96.028	0.521