Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GR131_RS08555 Genome accession   NZ_CP047147
Coordinates   2068890..2069561 (-) Length   223 a.a.
NCBI ID   WP_023419465.1    Uniprot ID   A0ABY3GS82
Organism   Streptomyces sp. GF20     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2063890..2074561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR131_RS08545 (GR131_08545) - 2066380..2067348 (+) 969 WP_159312199.1 hypothetical protein -
  GR131_RS08550 (GR131_08550) clpX 2067445..2068731 (-) 1287 WP_003948046.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GR131_RS08555 (GR131_08555) clpP 2068890..2069561 (-) 672 WP_023419465.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR131_RS08560 (GR131_08560) clpP 2069629..2070246 (-) 618 WP_008411883.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR131_RS08565 (GR131_08565) tig 2070545..2071942 (-) 1398 WP_159312200.1 trigger factor -
  GR131_RS08580 (GR131_08580) - 2072589..2072783 (-) 195 WP_003948050.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24311.59 Da        Isoelectric Point: 4.5381

>NTDB_id=357740 GR131_RS08555 WP_023419465.1 2068890..2069561(-) (clpP) [Streptomyces sp. GF20]
MNNFPGSGALGADGEYAGPRAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESIDPD
RDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGSPGKRMALPNARVLIHQPYSETGRGQVSDL
EIAANEILRMRSQLEEMLAKHSTTPLDKIRDDIERDKILTAEDALAYGLIDQIVSTRKLNAGV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=357740 GR131_RS08555 WP_023419465.1 2068890..2069561(-) (clpP) [Streptomyces sp. GF20]
ATGAACAACTTCCCCGGCAGCGGCGCACTCGGCGCCGACGGCGAATACGCGGGCCCGCGTGCCGAATCCCGTTACATCGT
TCCGCGGTTCGTCGAGCGCACCTCGCAGGGCGTGCGGGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCT
TCCTCGGCGTGCAGATCGACGACGCGTCGGCCAACGACGTGATGGCGCAGCTGCTGTGCCTGGAGTCGATCGACCCCGAC
CGGGACATCTCGATCTACATCAACAGCCCGGGCGGCTCCTTCACGGCGCTGACCGCGATCTACGACACGATGCAGTTCGT
GAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTGCTGCTGGCCGCCGGCTCGCCCGGCA
AGCGGATGGCGCTGCCCAACGCCCGCGTCCTGATCCACCAGCCGTACAGTGAGACGGGGCGCGGTCAGGTCTCCGACCTG
GAGATCGCGGCCAACGAAATCCTCCGGATGCGTTCGCAGTTGGAGGAGATGCTGGCCAAGCACTCGACGACGCCGCTGGA
CAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCCTACGGTCTGATCGACCAGATCG
TGTCGACCCGGAAGCTCAACGCCGGAGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(36-216)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

85.202

0.439
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.677

84.753

0.413
  clpP Streptococcus mutans UA159

44.221

89.238

0.395
  clpP Streptococcus pneumoniae Rx1

44.388

87.892

0.39
  clpP Streptococcus pneumoniae D39

44.388

87.892

0.39
  clpP Streptococcus pneumoniae R6

44.388

87.892

0.39
  clpP Streptococcus pneumoniae TIGR4

44.388

87.892

0.39
  clpP Lactococcus lactis subsp. cremoris KW2

44.388

87.892

0.39
  clpP Streptococcus pyogenes JRS4

44.615

87.444

0.39
  clpP Streptococcus pyogenes MGAS315

44.615

87.444

0.39
  clpP Streptococcus thermophilus LMD-9

44.103

87.444

0.386
  clpP Streptococcus thermophilus LMG 18311

44.103

87.444

0.386
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.367

87.892

0.381

Multiple sequence alignment