Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GR130_RS06140 Genome accession   NZ_CP047146
Coordinates   1467619..1468293 (+) Length   224 a.a.
NCBI ID   WP_159503760.1    Uniprot ID   -
Organism   Streptomyces sp. GS7     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 1462619..1473293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR130_RS06110 (GR130_06110) - 1463433..1463627 (+) 195 WP_159503757.1 hypothetical protein -
  GR130_RS06115 (GR130_06115) - 1463678..1464058 (-) 381 WP_159503758.1 arsenate reductase family protein -
  GR130_RS06130 (GR130_06130) tig 1465252..1466649 (+) 1398 WP_159503759.1 trigger factor -
  GR130_RS06135 (GR130_06135) clpP 1466951..1467553 (+) 603 WP_201305147.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR130_RS06140 (GR130_06140) clpP 1467619..1468293 (+) 675 WP_159503760.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR130_RS06145 (GR130_06145) clpX 1468455..1469738 (+) 1284 WP_159503761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GR130_RS06150 (GR130_06150) - 1469818..1470795 (-) 978 WP_159503762.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24783.18 Da        Isoelectric Point: 4.6475

>NTDB_id=357649 GR130_RS06140 WP_159503760.1 1467619..1468293(+) (clpP) [Streptomyces sp. GS7]
MNNFPGSGLYERAQAEFSGMPAESRYIVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPFSETGRGQVSD
LEIAAREIQRMRQQLEEMLAKHSSTPIEKIREDIERDKILTAEESLAYGLVDQIVSTRKTSVSV

Nucleotide


Download         Length: 675 bp        

>NTDB_id=357649 GR130_RS06140 WP_159503760.1 1467619..1468293(+) (clpP) [Streptomyces sp. GS7]
ATGAACAACTTCCCCGGAAGCGGCCTCTACGAGCGCGCTCAGGCCGAGTTCTCCGGCATGCCCGCCGAGTCCCGCTATAT
CGTCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTCCGTGAGTACGACCCCTACGCCAAGCTCTTCGAGGAGCGGGTGA
TCTTCCTCGGTGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCG
GACCGCGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCGGACATCCAGACGGTGTGCATGGGCCAGGCGGCCTCCGCCGCGGCCGTGCTGCTGGCGGCCGGCACCCCGG
GCAAGCGCATGGCGCTGCCCAACGCCCGGGTGCTGATCCACCAGCCCTTCAGCGAGACCGGCCGCGGCCAGGTCTCCGAC
CTGGAGATCGCCGCCCGCGAGATCCAGCGGATGCGCCAGCAGCTGGAGGAGATGCTGGCCAAGCACTCGTCCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACCGCCGAGGAGTCCCTGGCGTACGGTCTGGTCGACCAGA
TCGTCTCGACGCGGAAGACCTCCGTCTCGGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

84.821

0.429
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

83.929

0.402
  clpP Streptococcus mutans UA159

44.444

88.393

0.393
  clpP Streptococcus thermophilus LMG 18311

44.845

86.607

0.388
  clpP Streptococcus thermophilus LMD-9

44.845

86.607

0.388
  clpP Streptococcus pyogenes JRS4

44.845

86.607

0.388
  clpP Streptococcus pyogenes MGAS315

44.845

86.607

0.388
  clpP Lactococcus lactis subsp. cremoris KW2

45.026

85.268

0.384
  clpP Streptococcus pneumoniae Rx1

44.041

86.161

0.379
  clpP Streptococcus pneumoniae D39

44.041

86.161

0.379
  clpP Streptococcus pneumoniae R6

44.041

86.161

0.379
  clpP Streptococcus pneumoniae TIGR4

44.041

86.161

0.379
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

85.268

0.375

Multiple sequence alignment