Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   E5678_RS20845 Genome accession   NZ_CP039252
Coordinates   4570869..4571267 (+) Length   132 a.a.
NCBI ID   WP_136180302.1    Uniprot ID   A0A4V1CIA0
Organism   Hydrogenophaga sp. PAMC20947     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4565869..4576267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5678_RS20820 (E5678_20805) - 4566010..4566246 (+) 237 WP_136180297.1 helix-turn-helix domain-containing protein -
  E5678_RS20825 (E5678_20810) purH 4566303..4567895 (+) 1593 WP_210732082.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  E5678_RS20830 (E5678_20815) hemL 4567959..4569254 (-) 1296 WP_136180299.1 glutamate-1-semialdehyde 2,1-aminomutase -
  E5678_RS20835 (E5678_20820) - 4569377..4570306 (-) 930 WP_136180300.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  E5678_RS20840 (E5678_20825) - 4570599..4570772 (+) 174 WP_136180301.1 rubredoxin -
  E5678_RS20845 (E5678_20830) pilG 4570869..4571267 (+) 399 WP_136180302.1 response regulator Regulator
  E5678_RS20850 (E5678_20835) - 4571267..4571632 (+) 366 WP_136180303.1 response regulator -
  E5678_RS20855 (E5678_20840) - 4571674..4572225 (+) 552 WP_136180304.1 chemotaxis protein CheW -
  E5678_RS20860 (E5678_20845) - 4572472..4574580 (+) 2109 WP_247597058.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14595.81 Da        Isoelectric Point: 5.8489

>NTDB_id=357648 E5678_RS20845 WP_136180302.1 4570869..4571267(+) (pilG) [Hydrogenophaga sp. PAMC20947]
MVSTTPALKVLVVDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALAKINDYQPDLVFCDILMPRLDGYQTCAIIKRNVRFS
DIPVVMLSSKDGVFDKARGRMVGSQEYLTKPFTKDQLLQAVQQFGSQPSGVA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=357648 E5678_RS20845 WP_136180302.1 4570869..4571267(+) (pilG) [Hydrogenophaga sp. PAMC20947]
ATTGTGAGCACGACACCTGCCTTGAAAGTTCTGGTGGTGGATGACAGCAACACCATCCGCCGAAGTGCTGAAATTTTTCT
CAAACAGGGCGGCCACGAAGTGTTGCTCGCTGAGGATGGTTTTGATGCTCTGGCCAAGATCAATGACTACCAGCCCGACT
TGGTCTTTTGCGACATCCTCATGCCGCGTCTTGATGGGTACCAGACCTGTGCCATTATCAAGCGCAATGTCCGTTTTTCA
GATATCCCTGTGGTCATGCTGTCTTCCAAGGACGGCGTCTTTGACAAGGCCCGGGGGCGCATGGTGGGTTCGCAGGAATA
CCTCACCAAGCCATTCACCAAAGACCAGCTCTTGCAAGCCGTGCAGCAGTTTGGATCACAACCGTCCGGAGTAGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V1CIA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.025

90.152

0.568

Multiple sequence alignment