Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   GR130_RS06135 Genome accession   NZ_CP047146
Coordinates   1466951..1467553 (+) Length   200 a.a.
NCBI ID   WP_201305147.1    Uniprot ID   -
Organism   Streptomyces sp. GS7     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1461951..1472553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR130_RS06105 (GR130_06105) - 1462468..1463298 (+) 831 WP_159503756.1 ABC transporter ATP-binding protein -
  GR130_RS06110 (GR130_06110) - 1463433..1463627 (+) 195 WP_159503757.1 hypothetical protein -
  GR130_RS06115 (GR130_06115) - 1463678..1464058 (-) 381 WP_159503758.1 arsenate reductase family protein -
  GR130_RS06130 (GR130_06130) tig 1465252..1466649 (+) 1398 WP_159503759.1 trigger factor -
  GR130_RS06135 (GR130_06135) clpP 1466951..1467553 (+) 603 WP_201305147.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR130_RS06140 (GR130_06140) clpP 1467619..1468293 (+) 675 WP_159503760.1 ATP-dependent Clp protease proteolytic subunit Regulator
  GR130_RS06145 (GR130_06145) clpX 1468455..1469738 (+) 1284 WP_159503761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GR130_RS06150 (GR130_06150) - 1469818..1470795 (-) 978 WP_159503762.1 hypothetical protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21029.92 Da        Isoelectric Point: 4.6579

>NTDB_id=357648 GR130_RS06135 WP_201305147.1 1466951..1467553(+) (clpP) [Streptomyces sp. GS7]
MPSAAAEPTSGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIFLYINSPGGSVTAGMAIYDTMQYI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAEQLLRTKKRLGELSAMHTGQTLEQ
WTKDADRDRWFTAEEAKAYGLIDDVMPSAAGVPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=357648 GR130_RS06135 WP_201305147.1 1466951..1467553(+) (clpP) [Streptomyces sp. GS7]
ATGCCTTCCGCCGCCGCTGAGCCGACCTCCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTCGCCGCTGATCCGGACA
AGGACATCTTCCTCTACATCAACTCCCCCGGTGGTTCGGTCACGGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTCACCATCGCCATGGGCCTCGCCGCTTCGATGGGCCAGTTCCTGCTGAGCGCCGGCACCCCGGGCAA
GCGCTTCGCGCTGCCGAACGCCGAGATCCTCATCCACCAGCCCTCCGCGGGCCTGGCGGGCTCGGCCTCGGACATCAAGA
TCCACGCCGAGCAGCTGCTCCGTACGAAGAAGCGCCTGGGCGAGCTCTCCGCCATGCACACCGGCCAGACGCTGGAGCAG
TGGACCAAGGACGCCGACCGCGACCGATGGTTCACCGCCGAGGAGGCCAAGGCGTACGGCCTCATCGACGACGTCATGCC
CTCCGCCGCCGGCGTTCCGGGCGGGGGCGGCACCGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Lactococcus lactis subsp. cremoris KW2

52.88

95.5

0.505
  clpP Bacillus subtilis subsp. subtilis str. 168

54.011

93.5

0.505
  clpP Streptococcus mutans UA159

52.356

95.5

0.5
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.356

95.5

0.5
  clpP Streptococcus pyogenes MGAS315

51.309

95.5

0.49
  clpP Streptococcus pyogenes JRS4

51.309

95.5

0.49
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

51.579

95

0.49
  clpP Streptococcus thermophilus LMG 18311

49.215

95.5

0.47
  clpP Streptococcus thermophilus LMD-9

49.215

95.5

0.47
  clpP Streptococcus pneumoniae Rx1

48.691

95.5

0.465
  clpP Streptococcus pneumoniae D39

48.691

95.5

0.465
  clpP Streptococcus pneumoniae R6

48.691

95.5

0.465
  clpP Streptococcus pneumoniae TIGR4

48.691

95.5

0.465

Multiple sequence alignment