Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E5677_RS13075 Genome accession   NZ_CP039251
Coordinates   3151724..3152947 (+) Length   407 a.a.
NCBI ID   WP_062843518.1    Uniprot ID   -
Organism   Psychrobacter sp. PAMC27889     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3146724..3157947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5677_RS13060 (E5677_13060) secG 3148011..3148319 (-) 309 WP_025652589.1 preprotein translocase subunit SecG -
  E5677_RS13065 (E5677_13065) tpiA 3148535..3149341 (-) 807 WP_062843520.1 triose-phosphate isomerase -
  E5677_RS13070 (E5677_13070) pilB 3149799..3151505 (+) 1707 WP_062843519.1 type IV-A pilus assembly ATPase PilB Machinery gene
  E5677_RS13075 (E5677_13075) pilC 3151724..3152947 (+) 1224 WP_062843518.1 type II secretion system F family protein Machinery gene
  E5677_RS13080 (E5677_13080) pilD 3152955..3153854 (+) 900 WP_062843517.1 prepilin peptidase Machinery gene
  E5677_RS13085 (E5677_13085) coaE 3153985..3154668 (+) 684 WP_062843516.1 dephospho-CoA kinase -
  E5677_RS13090 (E5677_13090) rlmB 3154631..3155401 (-) 771 WP_062843515.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E5677_RS13095 (E5677_13095) - 3155614..3155949 (-) 336 WP_062843514.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44567.57 Da        Isoelectric Point: 9.7724

>NTDB_id=357623 E5677_RS13075 WP_062843518.1 3151724..3152947(+) (pilC) [Psychrobacter sp. PAMC27889]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKSIKAIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKELVLQIKADIEAGGTFASALRKHPRYFDDLFCSLVESGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVIIVAIIVTMILLIKVVPVFSGLFESFGAELPAFTQMVVGMSEWMQSWWFILIIIIGGAIIGF
SEAKKRSKKFRDFLDRAALKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLVIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=357623 E5677_RS13075 WP_062843518.1 3151724..3152947(+) (pilC) [Psychrobacter sp. PAMC27889]
ATGGCAAAAGCTAAGACCGATATGCTGTTAGACTTTGTCTATGATGGAGTGAACCGGCGCGGACAAAAAGTAAAAGGCGA
GACCACCAGTCGTAGTTTAGAGCTAGCAAAAGCCACATTGCGTAAACAAGGCATTACCGTCAAAGGGATTAAGAAAAAAC
CCAAACCCCTATATACCTTTAAAAAGTCTATCAAAGCCATTGATATTGCTATTTTTGCACGGCAGCTAGCAACCATGATG
AAAGCGGGTGTACCACTGACCCAGTCTTTTGAAATTGTGGCTGACTCACTAGACAATCCGAGCATGAAAGAGTTGGTATT
ACAGATAAAGGCGGATATCGAGGCAGGGGGCACCTTTGCTTCTGCCTTACGTAAACATCCGCGCTATTTTGACGACCTTT
TTTGTTCGCTCGTTGAGTCTGGTGAACAATCAGGGGCGCTTGAGACCATGCTGGAGCGGGTTGCTACTTATAAAGAAAAG
AGTGAATTACTGAAGGCCAAGATTAAGAAGGCCATGAAGTATCCGATTGCGGTTATTATCGTAGCCATTATTGTTACCAT
GATTTTGCTCATCAAAGTAGTGCCTGTCTTTTCTGGCTTGTTTGAATCTTTTGGTGCCGAGCTCCCAGCATTTACACAAA
TGGTGGTTGGTATGTCTGAGTGGATGCAGTCTTGGTGGTTTATTTTAATTATTATTATTGGTGGTGCTATTATTGGTTTT
TCAGAGGCTAAAAAACGCTCCAAAAAATTCCGTGATTTTTTAGATCGCGCCGCCTTAAAAGCGCCCATATTCGGCAACAT
TGCTTATCAAGCGGTTATTGCCCGTTTCGCTCGTACGCTATCGACGACTTTTGCGGCTGGTGTACCACTTATTGATGCAT
TAGATTCTACGGCAGGCGCAGCAAACAATGTCGTTTTTTATAATGCCATTCAGCAGATTAAAAATGATGTATCAACCGGG
CAACAGCTACAATTTTCGATACGCTCGACCAATCTGTTTCCAAGTTTGGTCATCCAAATGGTCGGTATTGGAGAAGAATC
AGGTAGTTTAGAAGAGATGCTTGATAAAGTGGCTGTCTACTACGAGAACGAAGTCGACAATGCCGTAGATGGCTTAACCA
GTCTGATGGAGCCACTCATTATGGCAGTGTTAGGGGTTTTAGTAGGAGGGTTGGTCATTGCAATGTACTTGCCAATCTTC
CAAATGGGTTCAGTGGTAGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.343

100

0.705
  pilC Acinetobacter baylyi ADP1

67.892

100

0.681
  pilC Pseudomonas stutzeri DSM 10701

63.544

97.052

0.617
  pilC Legionella pneumophila strain ERS1305867

55.89

98.034

0.548
  pilC Vibrio cholerae strain A1552

43.873

100

0.44
  pilG Neisseria gonorrhoeae MS11

44.444

97.297

0.432
  pilG Neisseria meningitidis 44/76-A

44.192

97.297

0.43
  pilC Vibrio campbellii strain DS40M4

41.728

99.509

0.415

Multiple sequence alignment