Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   GR129_RS24295 Genome accession   NZ_CP047144
Coordinates   5413961..5414626 (-) Length   221 a.a.
NCBI ID   WP_159705138.1    Uniprot ID   -
Organism   Streptomyces sp. HF10     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5408961..5419626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GR129_RS24280 (GR129_24280) - 5410423..5410944 (-) 522 WP_159705132.1 DUF1990 domain-containing protein -
  GR129_RS24285 (GR129_24285) - 5411034..5412689 (-) 1656 WP_159705135.1 M4 family metallopeptidase -
  GR129_RS24290 (GR129_24290) - 5412996..5413283 (-) 288 Protein_4802 ABC transporter ATP-binding protein -
  GR129_RS24295 (GR129_24295) vraR 5413961..5414626 (-) 666 WP_159705138.1 response regulator transcription factor Regulator
  GR129_RS24300 (GR129_24300) - 5414616..5415866 (-) 1251 WP_159705141.1 sensor histidine kinase -
  GR129_RS24305 (GR129_24305) - 5415892..5416626 (-) 735 WP_145485716.1 ABC transporter permease -
  GR129_RS24310 (GR129_24310) - 5416623..5417531 (-) 909 WP_201300664.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23186.40 Da        Isoelectric Point: 6.2639

>NTDB_id=357624 GR129_RS24295 WP_159705138.1 5413961..5414626(-) (vraR) [Streptomyces sp. HF10]
MTTDPLITLLIVDDHPVVRDGLRGMFESASGSASGSAPGFRVLGEAASGPEAVARAAELDPDVILMDLRMPGGSGVAAIR
ELTRRGARAKVLVLTTYDTDSDTLPAIEAGATGYLLKDAPRDELFTAVRAASEGRTVLSPAVASRLVQAVRTPTPGNEPL
SAREREVLALVARGTSNREIARELFISEATVKTHLTHLYTKLGAKDRAAAVAAAYDRGILG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=357624 GR129_RS24295 WP_159705138.1 5413961..5414626(-) (vraR) [Streptomyces sp. HF10]
ATGACCACTGACCCCCTCATCACGCTGCTGATCGTCGACGACCACCCGGTCGTCCGGGACGGTCTGCGCGGCATGTTCGA
GTCCGCGTCCGGCTCCGCGTCCGGATCCGCGCCCGGCTTCCGGGTGCTCGGCGAGGCCGCGAGCGGTCCCGAGGCGGTCG
CGCGGGCGGCCGAGCTGGACCCCGACGTGATCCTGATGGACCTGCGCATGCCCGGCGGTTCGGGCGTCGCCGCCATCCGC
GAGCTGACCCGCCGGGGCGCCCGCGCCAAGGTCCTGGTCCTCACCACGTACGACACCGACTCCGACACCCTCCCCGCGAT
CGAGGCCGGTGCCACCGGCTATCTCCTCAAGGACGCCCCGCGCGACGAGCTGTTCACCGCCGTCCGCGCCGCGTCCGAGG
GCCGTACCGTCCTCTCCCCCGCCGTCGCCTCCCGCCTCGTCCAGGCCGTCCGCACCCCCACCCCGGGCAACGAGCCCCTC
TCCGCCCGCGAGCGCGAGGTCCTCGCCCTGGTGGCCAGGGGCACCTCCAACCGCGAGATCGCCCGCGAACTCTTCATCAG
CGAGGCCACGGTGAAGACCCACCTCACCCACCTCTACACCAAGCTGGGCGCCAAGGACCGCGCGGCCGCGGTGGCGGCGG
CGTACGACCGGGGGATCCTGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(10-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.383

96.833

0.362

Multiple sequence alignment