Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   A7X85_RS17275 Genome accession   NZ_CP047019
Coordinates   3910988..3911608 (-) Length   206 a.a.
NCBI ID   WP_055723189.1    Uniprot ID   -
Organism   Streptomyces sp. ST1015     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3905988..3916608
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X85_RS17260 (A7X85_17335) - 3907349..3908335 (+) 987 WP_112472161.1 hypothetical protein -
  A7X85_RS17265 (A7X85_17340) clpX 3908406..3909695 (-) 1290 WP_109362284.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  A7X85_RS17270 (A7X85_17345) clpP 3909877..3910557 (-) 681 WP_109362260.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A7X85_RS17275 (A7X85_17350) clpP 3910988..3911608 (-) 621 WP_055723189.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A7X85_RS17280 (A7X85_17355) tig 3911849..3913237 (-) 1389 WP_162650074.1 trigger factor -
  A7X85_RS17295 (A7X85_17370) - 3913756..3913950 (-) 195 WP_010355309.1 hypothetical protein -
  A7X85_RS17300 (A7X85_17375) - 3914015..3914767 (-) 753 WP_112472163.1 DUF6508 domain-containing protein -
  A7X85_RS17305 (A7X85_17380) - 3914802..3915983 (-) 1182 WP_055723192.1 PP2C family protein-serine/threonine phosphatase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21798.79 Da        Isoelectric Point: 4.9921

>NTDB_id=356936 A7X85_RS17275 WP_055723189.1 3910988..3911608(-) (clpP) [Streptomyces sp. ST1015]
MTNLMPSAAGEPSIGGGLGDHVYNRLLNERIIFLGQPVDDDIANRITAQLLLLAAADPEKDINLYINSPGGSITAGMAIY
DTMQFIKNDVMTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTSLHT
GQSVEQITRDSDRDRWFDAHEAKEYGLIDDVIATAAGMPGGGGTGA

Nucleotide


Download         Length: 621 bp        

>NTDB_id=356936 A7X85_RS17275 WP_055723189.1 3910988..3911608(-) (clpP) [Streptomyces sp. ST1015]
GTGACGAATCTGATGCCCTCCGCCGCCGGTGAGCCCTCCATCGGCGGTGGCCTCGGCGACCATGTCTACAACCGTCTGCT
CAACGAGCGGATCATCTTCCTCGGCCAGCCGGTGGACGACGACATCGCGAACCGGATCACCGCGCAGCTGCTGTTGCTGG
CCGCCGCGGACCCCGAGAAGGACATCAACCTCTACATCAACAGCCCCGGCGGCTCCATCACGGCCGGCATGGCGATCTAC
GACACGATGCAGTTCATCAAGAACGACGTCATGACGATCGCGATGGGCCTCGCCGCCTCCATGGGACAGTTCCTCCTCAG
CGCGGGCACCCCGGGCAAGCGCTTCGCGCTCCCGAACGCCGAGATCCTGATCCACCAGCCGTCCGCCGGCCTCGCCGGCT
CGGCCTCGGACATCAAGATCCACGCCGAGCGCCTCCTCCACACGAAGAAGCGCATGGCCGAGCTGACGTCCCTCCACACC
GGCCAGTCCGTCGAGCAGATCACCCGTGACTCCGACCGTGACCGCTGGTTCGACGCCCACGAGGCCAAGGAGTACGGCCT
CATCGACGACGTCATCGCCACAGCCGCCGGCATGCCGGGCGGCGGCGGCACCGGGGCGTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(21-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

56.316

92.233

0.519
  clpP Lactococcus lactis subsp. cremoris KW2

52.577

94.175

0.495
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.062

94.175

0.49
  clpP Streptococcus mutans UA159

51.562

93.204

0.481
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.846

88.35

0.476
  clpP Streptococcus pyogenes MGAS315

48.691

92.718

0.451
  clpP Streptococcus pyogenes JRS4

48.691

92.718

0.451
  clpP Streptococcus pneumoniae R6

51.724

84.466

0.437
  clpP Streptococcus pneumoniae TIGR4

51.724

84.466

0.437
  clpP Streptococcus pneumoniae Rx1

51.724

84.466

0.437
  clpP Streptococcus pneumoniae D39

51.724

84.466

0.437
  clpP Streptococcus thermophilus LMG 18311

51.445

83.981

0.432
  clpP Streptococcus thermophilus LMD-9

51.445

83.981

0.432