Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   A7X85_RS17270 Genome accession   NZ_CP047019
Coordinates   3909877..3910557 (-) Length   226 a.a.
NCBI ID   WP_109362260.1    Uniprot ID   A0ABW9I3C9
Organism   Streptomyces sp. ST1015     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3904877..3915557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7X85_RS17260 (A7X85_17335) - 3907349..3908335 (+) 987 WP_112472161.1 hypothetical protein -
  A7X85_RS17265 (A7X85_17340) clpX 3908406..3909695 (-) 1290 WP_109362284.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  A7X85_RS17270 (A7X85_17345) clpP 3909877..3910557 (-) 681 WP_109362260.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A7X85_RS17275 (A7X85_17350) clpP 3910988..3911608 (-) 621 WP_055723189.1 ATP-dependent Clp protease proteolytic subunit Regulator
  A7X85_RS17280 (A7X85_17355) tig 3911849..3913237 (-) 1389 WP_162650074.1 trigger factor -
  A7X85_RS17295 (A7X85_17370) - 3913756..3913950 (-) 195 WP_010355309.1 hypothetical protein -
  A7X85_RS17300 (A7X85_17375) - 3914015..3914767 (-) 753 WP_112472163.1 DUF6508 domain-containing protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24941.37 Da        Isoelectric Point: 4.6351

>NTDB_id=356935 A7X85_RS17270 WP_109362260.1 3909877..3910557(-) (clpP) [Streptomyces sp. ST1015]
MNSFPGSGLYESAQAEYTGPKAESRYVIPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRAQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLVDQIISTRKMNNASIR

Nucleotide


Download         Length: 681 bp        

>NTDB_id=356935 A7X85_RS17270 WP_109362260.1 3909877..3910557(-) (clpP) [Streptomyces sp. ST1015]
GTGAACAGCTTTCCCGGCAGCGGACTGTACGAGAGCGCCCAGGCCGAGTACACCGGCCCGAAGGCCGAGTCCCGCTATGT
GATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCATCCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGGGTCA
TCTTCCTCGGCGTCCAGATCGACGACGCGTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCG
GACCGGGACATCTCGGTCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTGACCGCGATCTACGACACCATGCAGTT
CGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCGGCGATCCTGCTGGCCGCCGGCACCCCCG
GCAAGCGCATGGCCCTGCCGAACGCCCGCGTCCTGATCCACCAGCCCTACAGCGAGACGGGCCGGGGCCAGGTCTCGGAC
CTGGAGATCGCGGCCAACGAGATCCTCCGGATGCGCGCGCAGCTGGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTGACCGCCGAGGACGCGCTCGCGTACGGCCTGGTCGACCAGA
TCATCTCCACCCGGAAGATGAACAACGCGTCCATCCGTTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.579

84.071

0.434
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

83.186

0.412
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pyogenes JRS4

44.615

86.283

0.385
  clpP Streptococcus pyogenes MGAS315

44.615

86.283

0.385
  clpP Streptococcus pneumoniae TIGR4

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. cremoris KW2

43.878

86.726

0.381
  clpP Streptococcus pneumoniae Rx1

43.878

86.726

0.381
  clpP Streptococcus pneumoniae D39

43.878

86.726

0.381
  clpP Streptococcus pneumoniae R6

43.878

86.726

0.381
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.857

86.726

0.372