Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   VEA_RS05010 Genome accession   NC_013456
Coordinates   1030809..1032032 (-) Length   407 a.a.
NCBI ID   WP_006743173.1    Uniprot ID   -
Organism   Vibrio antiquarius     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025809..1037032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VEA_RS04980 (VEA_002538) trmD 1026343..1027086 (+) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VEA_RS04985 (VEA_002539) rplS 1027128..1027481 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  VEA_RS04990 (VEA_002540) yacG 1028150..1028344 (-) 195 WP_005396692.1 DNA gyrase inhibitor YacG -
  VEA_RS04995 (VEA_002541) zapD 1028492..1029232 (-) 741 WP_012841416.1 cell division protein ZapD -
  VEA_RS05000 (VEA_002542) coaE 1029260..1029874 (-) 615 WP_012841417.1 dephospho-CoA kinase -
  VEA_RS05005 (VEA_002543) pilD 1029875..1030744 (-) 870 WP_012841418.1 A24 family peptidase Machinery gene
  VEA_RS05010 (VEA_002544) pilC 1030809..1032032 (-) 1224 WP_006743173.1 type II secretion system F family protein Machinery gene
  VEA_RS05015 (VEA_002545) pilB 1032056..1033741 (-) 1686 WP_006743172.1 type IV-A pilus assembly ATPase PilB Machinery gene
  VEA_RS05020 (VEA_002546) pilA 1033747..1034220 (-) 474 WP_012841419.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  VEA_RS05025 (VEA_002547) nadC 1034482..1035369 (-) 888 WP_012841420.1 carboxylating nicotinate-nucleotide diphosphorylase -
  VEA_RS05030 (VEA_002548) ampD 1035462..1036013 (+) 552 WP_012841421.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45299.47 Da        Isoelectric Point: 10.3992

>NTDB_id=35641 VEA_RS05010 WP_006743173.1 1030809..1032032(-) (pilC) [Vibrio antiquarius]
MKSTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSKRSDSFRLMLNRSVLKFPVLGPVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=35641 VEA_RS05010 WP_006743173.1 1030809..1032032(-) (pilC) [Vibrio antiquarius]
ATGAAAAGCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCTGGCAAAAAGACGTCTGGACAAAC
CCTCGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAGCACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTAAAAGGCAGAGACATCACGGTGTTTACCCGTCAAATTTCGACGATGTTG
ATAACCGGTGTACCCTTAGTTCAGGCTTTAAAATTGGTCTCAGAAAACCATAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAGGCAGGTACACCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCAACAGGTGAGCAATCCGGTAACTTAGCGGAAGTATTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAGCAGCTTCGTGCGAAAGTGATCAAAGCACTGATTTACCCAGCGATGGTAGTGCTAGTAGCGTTAGGCGTGTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACCAGGC
AAGTATTAGATCTTTCCGCCTGGACACAAAACTGGAGTCCGTTTATCGCACTAGGCTCCATTAGTTTATTCATCTCGGCG
AGAGTCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAATTTCCTGTTCTGGGCCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAAGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTCCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.978

100

0.87
  pilC Vibrio cholerae strain A1552

73.775

100

0.74
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment