Detailed information NTG0035640

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VEA_RS05005
• Genome accession: NC_013456
• Coordinates: 1029875..1030744 (-)
• Length: 289 a.a.
• NCBI ID: WP_012841418.1
• Uniprot ID: -
• Organism: Vibrio antiquarius
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1024875..1035744

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VEA_RS04970 (VEA_002536)	rpsP	1025489..1025737 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
VEA_RS04975 (VEA_002537)	rimM	1025767..1026315 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
VEA_RS04980 (VEA_002538)	trmD	1026343..1027086 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VEA_RS04985 (VEA_002539)	rplS	1027128..1027481 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
VEA_RS04990 (VEA_002540)	yacG	1028150..1028344 (-)	195	WP_005396692.1	DNA gyrase inhibitor YacG	-
VEA_RS04995 (VEA_002541)	zapD	1028492..1029232 (-)	741	WP_012841416.1	cell division protein ZapD	-
VEA_RS05000 (VEA_002542)	coaE	1029260..1029874 (-)	615	WP_012841417.1	dephospho-CoA kinase	-
VEA_RS05005 (VEA_002543)	pilD	1029875..1030744 (-)	870	WP_012841418.1	A24 family peptidase	Machinery gene
VEA_RS05010 (VEA_002544)	pilC	1030809..1032032 (-)	1224	WP_006743173.1	type II secretion system F family protein	Machinery gene
VEA_RS05015 (VEA_002545)	pilB	1032056..1033741 (-)	1686	WP_006743172.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VEA_RS05020 (VEA_002546)	pilA	1033747..1034220 (-)	474	WP_012841419.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
VEA_RS05025 (VEA_002547)	nadC	1034482..1035369 (-)	888	WP_012841420.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32523.70 Da
• Isoelectric Point: 7.0195

>NTDB_id=35640 VEA_RS05005 WP_012841418.1 1029875..1030744(-) (pilD) [Vibrio antiquarius]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=35640 VEA_RS05005 WP_012841418.1 1029875..1030744(-) (pilD) [Vibrio antiquarius]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTTATCGTGGGTAGCTTCCTCAA
CGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCTATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCGCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGCTACCAGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AATTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTTTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.003	100	0.91
pilD	Vibrio cholerae strain A1552	72.917	99.654	0.727
pilD	Acinetobacter baumannii D1279779	52.593	93.426	0.491
pilD	Acinetobacter nosocomialis M2	52.222	93.426	0.488
pilD	Neisseria gonorrhoeae MS11	48.551	95.502	0.464