Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GPY01_RS16230 Genome accession   NZ_CP046839
Coordinates   2532112..2533338 (-) Length   408 a.a.
NCBI ID   WP_032471528.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2527112..2538338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS16210 yacG 2529321..2529518 (-) 198 WP_000162863.1 DNA gyrase inhibitor YacG -
  GPY01_RS16215 zapD 2529802..2530542 (-) 741 WP_000207194.1 cell division protein ZapD -
  GPY01_RS16220 coaE 2530574..2531182 (-) 609 WP_170921665.1 dephospho-CoA kinase -
  GPY01_RS16225 pilD 2531179..2532054 (-) 876 WP_033931359.1 A24 family peptidase Machinery gene
  GPY01_RS16230 pilC 2532112..2533338 (-) 1227 WP_032471528.1 type II secretion system F family protein Machinery gene
  GPY01_RS16235 pilB 2533381..2535069 (-) 1689 WP_123161616.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY01_RS16240 pilA 2535076..2535528 (-) 453 WP_123161617.1 pilin Machinery gene
  GPY01_RS16245 nadC 2535773..2536663 (-) 891 WP_002053528.1 carboxylating nicotinate-nucleotide diphosphorylase -
  GPY01_RS16250 ampD 2536963..2537508 (+) 546 WP_123161618.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  GPY01_RS16255 fldB 2537803..2538321 (-) 519 WP_000690112.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45138.42 Da        Isoelectric Point: 10.3744

>NTDB_id=356364 GPY01_RS16230 WP_032471528.1 2532112..2533338(-) (pilC) [Vibrio cholerae strain 2011EL-1271]
MKATQTLPLKNYRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAATIFG
LKALRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVHRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=356364 GPY01_RS16230 WP_032471528.1 2532112..2533338(-) (pilC) [Vibrio cholerae strain 2011EL-1271]
ATGAAAGCGACCCAAACCTTACCTCTGAAAAATTATCGCTGGAAAGGCATCAACAGCAACGGCAAAAAAGTTTCCGGCCA
GATGCTCGCCATCTCCGAAATCGAGGTGCGCGATAAGCTCAAAGATCAGCATATTCAGATCAAAAAACTCAAAAAAGGCA
GTGTGTCTCTTTTGGCACGCCTAACCCATCGCGTGAAAAGTAAAGATATTACGATTTTGACTCGGCAGTTGGCGACCATG
CTCACCACGGGCGTACCTATTGTGCAAGCCCTCAAGTTGGTGGGCGATAATCACCGTAAAGCTGAGATGAAATCGATTCT
GGCGCAAATCACCAAAAGCGTGGAAGCGGGCACGCCGCTTTCCAAGGCGATGCGCACCGCCAGCGCCCATTTTGATACCT
TGTATGTCGACTTAGTGGAAACCGGAGAGATGTCCGGTAACTTACCTGAGGTGTTTGAGCGTTTGGCCACCTACCGCGAG
AAAAGCGAGCAGCTACGCGCCAAGGTGATTAAAGCGCTCATCTACCCGAGTATGGTGGTGTTGGTGGCTCTTGGGGTTTC
CTACTTGATGTTGACCATGGTGATCCCAGAGTTTGAAAGCATGTTTAAAGGCTTTGGCGCCGAGCTGCCTTGGTTTACAC
AGCAAGTGCTGAAACTCTCACACTGGGTGCAGGCTTACAGCTTATGGGCATTTATCGCCATCGCAGCAACCATTTTTGGC
TTGAAAGCGCTGCGTAAAAACTCTTTCCAGATCCGTTTAAAAACCAGCCGCTTAGGGCTGAAATTTCCGATTATTGGTAA
TGTGCTCGCTAAGGCTTCCATCGCCAAATTCAGCCGCACCCTCGCCACCAGCTTTGCCGCGGGGATCCCAATTCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCCGGCAATGTGCACTTTGAAACTGCGATTAATGAGGTACATCGTGATACTGCCGCC
GGTATGCCAATGTACATTGCCATGCGCAATACCGAAGCCTTTCCCGAAATGGTGCTGCAAATGGTGATGATCGGTGAAGA
GTCTGGTCAATTAGATGACATGCTCAACAAGGTCGCAACCATCTATGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GCAAAATTCTTGAGCCGCTGATCATCGTCTTTCTTGGGACAGTCGTGGGCGGTTTGGTGGTGGCGATGTACTTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

99.51

100

0.995
  pilC Vibrio campbellii strain DS40M4

73.5

98.039

0.721
  pilC Acinetobacter baumannii D1279779

42.647

100

0.426
  pilC Acinetobacter baylyi ADP1

41.769

99.755

0.417
  pilC Legionella pneumophila strain ERS1305867

42.211

97.549

0.412
  pilC Pseudomonas stutzeri DSM 10701

42.105

97.794

0.412
  pilG Neisseria gonorrhoeae MS11

41.045

98.529

0.404
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4