Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   GPY01_RS16225 Genome accession   NZ_CP046839
Coordinates   2531179..2532054 (-) Length   291 a.a.
NCBI ID   WP_033931359.1    Uniprot ID   -
Organism   Vibrio cholerae strain 2011EL-1271     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2526179..2537054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY01_RS16205 parC 2526987..2529272 (+) 2286 WP_123161615.1 DNA topoisomerase IV subunit A -
  GPY01_RS16210 yacG 2529321..2529518 (-) 198 WP_000162863.1 DNA gyrase inhibitor YacG -
  GPY01_RS16215 zapD 2529802..2530542 (-) 741 WP_000207194.1 cell division protein ZapD -
  GPY01_RS16220 coaE 2530574..2531182 (-) 609 WP_170921665.1 dephospho-CoA kinase -
  GPY01_RS16225 pilD 2531179..2532054 (-) 876 WP_033931359.1 A24 family peptidase Machinery gene
  GPY01_RS16230 pilC 2532112..2533338 (-) 1227 WP_032471528.1 type II secretion system F family protein Machinery gene
  GPY01_RS16235 pilB 2533381..2535069 (-) 1689 WP_123161616.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GPY01_RS16240 pilA 2535076..2535528 (-) 453 WP_123161617.1 pilin Machinery gene
  GPY01_RS16245 nadC 2535773..2536663 (-) 891 WP_002053528.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32419.71 Da        Isoelectric Point: 7.6293

>NTDB_id=356363 GPY01_RS16225 WP_033931359.1 2531179..2532054(-) (pilD) [Vibrio cholerae strain 2011EL-1271]
MELFYFYPWLFPVLATLFGLIVGSFLNVVIYRLPKIMEREWRAECAASFPEYGITPPEGKLTLSLPRSTCPHCQTPIRVI
DNIPLLSWLALRGKCSHCKAPISARYPLIELLTALMSLVIATHFPFGVFGVALLFFSYVLIAATFIDFDTLLLPDQLTLP
LLWGGIALALLGFSPVSLSDAVIGAMAGYLSLWSIYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPVIVLLSSVVGV
IFGLIQLRQQKKGIDMAFPFGPYLAIAGWFALLWGDKVIDWYFTTWVGQPL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=356363 GPY01_RS16225 WP_033931359.1 2531179..2532054(-) (pilD) [Vibrio cholerae strain 2011EL-1271]
ATGGAACTGTTTTACTTCTACCCTTGGCTGTTTCCGGTGCTCGCCACGCTGTTTGGCTTGATTGTCGGTAGCTTTCTCAA
TGTGGTGATCTATCGCTTACCCAAAATCATGGAGCGTGAATGGCGCGCCGAATGTGCGGCGAGTTTTCCTGAATATGGCA
TCACGCCACCAGAGGGTAAACTGACCCTCAGTTTGCCGCGTTCCACTTGCCCACACTGCCAAACGCCGATTCGCGTCATT
GATAATATTCCGCTACTGAGTTGGCTGGCGCTGCGCGGCAAATGCTCACACTGTAAAGCGCCGATCAGCGCTCGTTATCC
CTTGATTGAGCTCCTCACTGCTCTCATGAGCTTAGTGATTGCCACTCATTTTCCGTTCGGGGTGTTTGGCGTGGCGCTGC
TGTTTTTCAGCTATGTGTTGATTGCGGCGACCTTCATCGACTTCGATACCCTGTTGCTGCCCGACCAATTAACGCTACCT
TTACTGTGGGGCGGTATTGCGCTGGCACTGCTTGGCTTTTCTCCGGTTTCACTGAGTGATGCGGTGATCGGAGCCATGGC
GGGTTATCTCTCGCTGTGGTCAATTTACTGGCTATTTAAACTGCTGACTGGTAAAGAAGGCATGGGTTATGGCGATTTCA
AATTGCTCGCCGCTCTCGGCGCTTGGCTGGGTTGGCAGCAGTTACCTGTCATCGTACTGCTCTCATCGGTGGTTGGGGTG
ATTTTCGGTTTAATCCAATTGCGCCAGCAGAAAAAAGGGATCGATATGGCCTTTCCGTTTGGCCCTTATCTCGCCATCGC
GGGATGGTTTGCCTTGCTGTGGGGCGATAAGGTAATTGATTGGTACTTCACCACTTGGGTAGGACAACCGTTATGA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(17-124)

Type IV leader peptidase family (Peptidase_A24)

(135-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

99.313

100

0.993
  pilD Vibrio campbellii strain DS40M4

75.694

98.969

0.749
  pilD Acinetobacter nosocomialis M2

54.044

93.471

0.505
  pilD Acinetobacter baumannii D1279779

53.676

93.471

0.502
  pilD Neisseria gonorrhoeae MS11

45.139

98.969

0.447