Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GPY29_RS02715 Genome accession   NZ_CP046787
Coordinates   528298..529155 (+) Length   285 a.a.
NCBI ID   WP_005496771.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 523298..534155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS02700 - 524353..525378 (+) 1026 WP_005458995.1 ABC transporter permease subunit -
  GPY29_RS02705 - 525380..526423 (+) 1044 WP_015296095.1 ABC transporter permease subunit -
  GPY29_RS02710 - 526462..528288 (+) 1827 WP_029836917.1 extracellular solute-binding protein -
  GPY29_RS02715 amiE 528298..529155 (+) 858 WP_005496771.1 ABC transporter ATP-binding protein Regulator
  GPY29_RS02720 - 529192..530031 (+) 840 WP_005458953.1 ABC transporter ATP-binding protein -
  GPY29_RS02725 - 530161..530586 (+) 426 WP_005458957.1 phosphate-starvation-inducible PsiE family protein -
  GPY29_RS02730 - 530641..531507 (-) 867 WP_015296114.1 YicC/YloC family endoribonuclease -
  GPY29_RS02735 rph 531722..532438 (+) 717 WP_005496809.1 ribonuclease PH -
  GPY29_RS02740 pyrE 532543..533184 (+) 642 WP_005458955.1 orotate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31594.65 Da        Isoelectric Point: 4.4929

>NTDB_id=355782 GPY29_RS02715 WP_005496771.1 528298..529155(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1174]
MENDVILSVKDLEVEFITDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVNYRGTNLV
SLPAEEMYAMRGDRISIIFQDPMTALNPVHTIGRQLCEVLELHRPELGKKERESYAVEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=355782 GPY29_RS02715 WP_005496771.1 528298..529155(+) (amiE) [Vibrio parahaemolyticus strain 2013V-1174]
ATGGAAAACGATGTAATTTTGAGTGTAAAAGACCTCGAAGTGGAATTCATCACGGATGATGGCCCGGTAAAAGTACTCCA
TGGCGTGAACTTTGATGTTCGCGCAGGACGAACGCTCGGTCTCGTTGGTGAGTCTGGCAGTGGTAAGAGCGTGACCTCCA
TGTCCATCATGGGACTGTTGCCAAAGCCTTACGGCAATATTGTTAATGGTGAAGTTAACTACCGAGGTACCAATCTGGTG
TCGCTACCAGCGGAAGAAATGTACGCCATGCGCGGCGACCGCATTTCGATCATTTTCCAAGACCCAATGACGGCGTTGAA
TCCAGTGCATACCATTGGCCGCCAACTGTGCGAAGTGTTGGAATTACACCGTCCTGAGTTAGGTAAAAAAGAGCGCGAAT
CCTACGCGGTAGAAATGCTGGCTAAAGTGAAAATTCCAATGCCAGAAAAGCGCCTCAACGAATATCCGCACAACCTATCT
GGTGGTATGCGCCAGCGCGTGATGATCGCAATGGCACTCGCATGTAAACCAGATATCTTGATTTGTGATGAGCCAACGAC
GGCACTGGATGTAACAGTACAGGCGTCTATCCTTGAACTAATGAATGAACTCCAAGAAGAAACGGGCATGGCAATGATCT
TCATTACCCATGATTTAGGCGTAGTAGCTGAAGTGTGTGATGACGTTGCGGTAATGTATGGTGGTCGTATTGTCGAAAAA
GCGGAGATTTTTGAGCTGTTTGACAATCCGCAGCACCCTTACACGGAACGTTTGATGGGCTTAATGCCAAGCTTGGACAA
CGAACCTAAGCAGATGATTGATATCAAACCAATCGATGCCAGCATGTTTGCGAGCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(26-186)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.582

98.947

0.481
  amiE Streptococcus thermophilus LMD-9

48.582

98.947

0.481
  amiE Streptococcus salivarius strain HSISS4

48.582

98.947

0.481
  oppD Streptococcus mutans UA159

50.752

93.333

0.474
  amiF Streptococcus salivarius strain HSISS4

39.464

91.579

0.361

Multiple sequence alignment