Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | E5Q53_RS08680 | Genome accession | NZ_CP038817 |
| Coordinates | 1797403..1798599 (-) | Length | 398 a.a. |
| NCBI ID | WP_005707359.1 | Uniprot ID | A0AAE6JVR5 |
| Organism | Haemophilus parahaemolyticus strain NEB129 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1792403..1803599
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5Q53_RS08655 (E5Q53_08650) | - | 1792811..1792921 (-) | 111 | Protein_1654 | OmpW family protein | - |
| E5Q53_RS08660 (E5Q53_08655) | clpB | 1793249..1795822 (+) | 2574 | WP_005707373.1 | ATP-dependent chaperone ClpB | - |
| E5Q53_RS08665 (E5Q53_08660) | yacG | 1795932..1796117 (-) | 186 | WP_005707322.1 | DNA gyrase inhibitor YacG | - |
| E5Q53_RS08670 (E5Q53_08665) | coaE | 1796105..1796731 (-) | 627 | WP_005707349.1 | dephospho-CoA kinase | - |
| E5Q53_RS08675 (E5Q53_08670) | - | 1796752..1797396 (-) | 645 | WP_005707389.1 | A24 family peptidase | - |
| E5Q53_RS08680 (E5Q53_08675) | pilC | 1797403..1798599 (-) | 1197 | WP_005707359.1 | type II secretion system F family protein | Machinery gene |
| E5Q53_RS08685 (E5Q53_08680) | pilB | 1798592..1799977 (-) | 1386 | WP_005707356.1 | GspE/PulE family protein | Machinery gene |
| E5Q53_RS08690 (E5Q53_08685) | pilA | 1800045..1800512 (-) | 468 | WP_005707325.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| E5Q53_RS08695 (E5Q53_08690) | radA | 1800704..1802083 (+) | 1380 | WP_005707288.1 | DNA repair protein RadA | Machinery gene |
| E5Q53_RS08700 (E5Q53_08695) | - | 1802098..1802988 (+) | 891 | WP_039863409.1 | RimK family alpha-L-glutamate ligase | - |
Sequence
Protein
Download Length: 398 a.a. Molecular weight: 45679.18 Da Isoelectric Point: 9.4680
>NTDB_id=355781 E5Q53_RS08680 WP_005707359.1 1797403..1798599(-) (pilC) [Haemophilus parahaemolyticus strain NEB129]
MFKVYEFHWKAVNRFQKKQKGKLLARNQEELEQKLIKKGFQQIKISRNFILPKNPKSEEVTQLISQLALLINAKLPLKQA
LSIILENTQNIKLYLWIEEIIRSVELGYSFSTSLENLNRYLDNQEIQLIKMGEMSGKLGTILENIAKSRSESEKLFSKVK
KIMFYPVMVLVIALTLSIGMLVLIVPKFAELYSAKDKTLPFITEALFFLSNLLIDNYIFILFLFVLSGCFFSFLDKKTTI
IKKFKYYILSNFPVFKNIIGQSRIIYFTQNIALMLNASLRLDLILETFLSNKQADPILQQECQSVLTLIKQGYAFSECLN
TDVFESQTVQMLSVGERSGKLAEMSEYVSQIYKKKLDDQLDILSQLLEPALMVILGGIVGTIIVGLYLPIFDMGSLVE
MFKVYEFHWKAVNRFQKKQKGKLLARNQEELEQKLIKKGFQQIKISRNFILPKNPKSEEVTQLISQLALLINAKLPLKQA
LSIILENTQNIKLYLWIEEIIRSVELGYSFSTSLENLNRYLDNQEIQLIKMGEMSGKLGTILENIAKSRSESEKLFSKVK
KIMFYPVMVLVIALTLSIGMLVLIVPKFAELYSAKDKTLPFITEALFFLSNLLIDNYIFILFLFVLSGCFFSFLDKKTTI
IKKFKYYILSNFPVFKNIIGQSRIIYFTQNIALMLNASLRLDLILETFLSNKQADPILQQECQSVLTLIKQGYAFSECLN
TDVFESQTVQMLSVGERSGKLAEMSEYVSQIYKKKLDDQLDILSQLLEPALMVILGGIVGTIIVGLYLPIFDMGSLVE
Nucleotide
Download Length: 1197 bp
>NTDB_id=355781 E5Q53_RS08680 WP_005707359.1 1797403..1798599(-) (pilC) [Haemophilus parahaemolyticus strain NEB129]
ATGTTTAAGGTATATGAGTTTCATTGGAAAGCGGTAAATCGTTTTCAGAAAAAACAAAAAGGAAAATTATTAGCTAGAAA
TCAAGAAGAATTAGAACAAAAGCTAATAAAAAAAGGATTCCAACAAATTAAAATTAGTCGGAATTTTATTTTACCTAAAA
ATCCAAAATCGGAAGAGGTGACTCAACTTATTTCTCAACTTGCTTTACTAATTAACGCAAAACTTCCCTTAAAACAAGCG
TTATCAATCATTTTAGAAAATACACAAAATATAAAACTCTATTTATGGATTGAAGAAATAATACGTTCAGTTGAGTTAGG
TTATTCTTTTTCAACATCATTAGAAAATTTAAATCGCTATTTAGATAACCAGGAAATTCAGCTTATCAAAATGGGGGAGA
TGAGTGGAAAATTAGGAACAATACTTGAAAATATAGCTAAATCCAGATCTGAAAGTGAGAAATTATTTTCGAAAGTAAAG
AAGATTATGTTTTATCCTGTAATGGTATTAGTTATTGCTTTAACTCTTTCAATTGGAATGTTAGTACTCATTGTGCCTAA
ATTTGCAGAATTATATAGTGCGAAAGATAAAACATTGCCTTTTATCACTGAAGCACTCTTTTTTCTCTCTAATTTATTAA
TTGATAATTATATATTTATACTTTTTTTATTTGTGCTGAGTGGCTGTTTTTTCTCTTTTTTAGATAAAAAAACAACAATA
ATTAAAAAGTTTAAATACTATATTTTAAGTAATTTTCCTGTGTTTAAAAATATCATAGGTCAATCCCGTATTATTTATTT
CACTCAAAATATAGCCTTAATGTTAAATGCTAGCCTTCGATTAGATCTTATTTTAGAAACTTTTCTATCAAATAAACAGG
CAGATCCCATTTTACAACAAGAGTGTCAGTCGGTATTAACACTGATTAAACAAGGTTACGCTTTTTCCGAGTGTTTAAAT
ACAGATGTATTTGAAAGCCAAACTGTACAGATGTTATCTGTTGGTGAAAGAAGCGGAAAATTGGCTGAAATGAGTGAATA
TGTTAGCCAAATCTATAAAAAGAAATTAGATGATCAGCTTGATATTCTATCGCAGTTGCTTGAACCTGCATTAATGGTGA
TTCTTGGTGGTATTGTTGGCACTATTATTGTTGGGCTTTATTTACCTATTTTTGATATGGGATCTTTAGTTGAATAA
ATGTTTAAGGTATATGAGTTTCATTGGAAAGCGGTAAATCGTTTTCAGAAAAAACAAAAAGGAAAATTATTAGCTAGAAA
TCAAGAAGAATTAGAACAAAAGCTAATAAAAAAAGGATTCCAACAAATTAAAATTAGTCGGAATTTTATTTTACCTAAAA
ATCCAAAATCGGAAGAGGTGACTCAACTTATTTCTCAACTTGCTTTACTAATTAACGCAAAACTTCCCTTAAAACAAGCG
TTATCAATCATTTTAGAAAATACACAAAATATAAAACTCTATTTATGGATTGAAGAAATAATACGTTCAGTTGAGTTAGG
TTATTCTTTTTCAACATCATTAGAAAATTTAAATCGCTATTTAGATAACCAGGAAATTCAGCTTATCAAAATGGGGGAGA
TGAGTGGAAAATTAGGAACAATACTTGAAAATATAGCTAAATCCAGATCTGAAAGTGAGAAATTATTTTCGAAAGTAAAG
AAGATTATGTTTTATCCTGTAATGGTATTAGTTATTGCTTTAACTCTTTCAATTGGAATGTTAGTACTCATTGTGCCTAA
ATTTGCAGAATTATATAGTGCGAAAGATAAAACATTGCCTTTTATCACTGAAGCACTCTTTTTTCTCTCTAATTTATTAA
TTGATAATTATATATTTATACTTTTTTTATTTGTGCTGAGTGGCTGTTTTTTCTCTTTTTTAGATAAAAAAACAACAATA
ATTAAAAAGTTTAAATACTATATTTTAAGTAATTTTCCTGTGTTTAAAAATATCATAGGTCAATCCCGTATTATTTATTT
CACTCAAAATATAGCCTTAATGTTAAATGCTAGCCTTCGATTAGATCTTATTTTAGAAACTTTTCTATCAAATAAACAGG
CAGATCCCATTTTACAACAAGAGTGTCAGTCGGTATTAACACTGATTAAACAAGGTTACGCTTTTTCCGAGTGTTTAAAT
ACAGATGTATTTGAAAGCCAAACTGTACAGATGTTATCTGTTGGTGAAAGAAGCGGAAAATTGGCTGAAATGAGTGAATA
TGTTAGCCAAATCTATAAAAAGAAATTAGATGATCAGCTTGATATTCTATCGCAGTTGCTTGAACCTGCATTAATGGTGA
TTCTTGGTGGTATTGTTGGCACTATTATTGTTGGGCTTTATTTACCTATTTTTGATATGGGATCTTTAGTTGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Glaesserella parasuis strain SC1401 |
51.759 |
100 |
0.518 |
| pilC | Haemophilus influenzae Rd KW20 |
40.399 |
100 |
0.407 |
| pilC | Haemophilus influenzae 86-028NP |
39.9 |
100 |
0.402 |