Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   E5Q53_RS08695 Genome accession   NZ_CP038817
Coordinates   1800704..1802083 (+) Length   459 a.a.
NCBI ID   WP_005707288.1    Uniprot ID   A0AAE6MPP4
Organism   Haemophilus parahaemolyticus strain NEB129     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1795704..1807083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q53_RS08665 (E5Q53_08660) yacG 1795932..1796117 (-) 186 WP_005707322.1 DNA gyrase inhibitor YacG -
  E5Q53_RS08670 (E5Q53_08665) coaE 1796105..1796731 (-) 627 WP_005707349.1 dephospho-CoA kinase -
  E5Q53_RS08675 (E5Q53_08670) - 1796752..1797396 (-) 645 WP_005707389.1 A24 family peptidase -
  E5Q53_RS08680 (E5Q53_08675) pilC 1797403..1798599 (-) 1197 WP_005707359.1 type II secretion system F family protein Machinery gene
  E5Q53_RS08685 (E5Q53_08680) pilB 1798592..1799977 (-) 1386 WP_005707356.1 GspE/PulE family protein Machinery gene
  E5Q53_RS08690 (E5Q53_08685) pilA 1800045..1800512 (-) 468 WP_005707325.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  E5Q53_RS08695 (E5Q53_08690) radA 1800704..1802083 (+) 1380 WP_005707288.1 DNA repair protein RadA Machinery gene
  E5Q53_RS08700 (E5Q53_08695) - 1802098..1802988 (+) 891 WP_039863409.1 RimK family alpha-L-glutamate ligase -
  E5Q53_RS08705 (E5Q53_08700) rlmD 1802990..1804324 (-) 1335 WP_039863408.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  E5Q53_RS08710 (E5Q53_08705) - 1804338..1804592 (-) 255 WP_005707339.1 Txe/YoeB family addiction module toxin -
  E5Q53_RS08715 (E5Q53_08710) yefM 1804589..1804840 (-) 252 WP_005707332.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49730.34 Da        Isoelectric Point: 7.7112

>NTDB_id=355784 E5Q53_RS08695 WP_005707288.1 1800704..1802083(+) (radA) [Haemophilus parahaemolyticus strain NEB129]
MAKTPKTAYVCSDCGAEYSKWMGQCKECYAWNTISEIRLVSAKESKKNDRFSGYAGETSGKVQALSEISLQEVPRFSSGF
NELDRVLGGGVVPGSAILIGGHPGAGKSTLLLQVMCGLSKEIPTLYVTGEESLQQVAMRANRLGLPTEHLKMLSETSVEH
ICNIADQEKPQIMVIDSIQVMHLSDIQSSPGSVSQVRECASFLTRYAKTRQVAIIMVGHVTKDGTLAGPKVLEHAIDASL
LLEGESDSRYRTLRSQKNRFGAVNELGVFAMTEQGLREVKNPSAIFLSRSDELVSGSSVVVLWEGTRPLLVEIQALVDHS
MLANPRRVAVGLDHNRLSLLLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALILALISSFRNRPLPQDLVIFGEVG
LAGEIRPVPSGQERISEAAKHGFKRAIVPFGNMPKKSIKGMEVFGVKKLSDALDILGNL

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=355784 E5Q53_RS08695 WP_005707288.1 1800704..1802083(+) (radA) [Haemophilus parahaemolyticus strain NEB129]
ATGGCAAAGACACCAAAAACGGCTTATGTGTGTAGCGATTGTGGCGCAGAATACTCTAAGTGGATGGGGCAATGTAAAGA
GTGCTATGCGTGGAACACTATCAGCGAAATTCGTTTAGTTTCTGCTAAAGAAAGTAAAAAAAACGACCGTTTTAGTGGCT
ATGCGGGCGAAACTTCTGGCAAAGTGCAAGCACTCTCTGAGATTAGCTTGCAAGAAGTACCGCGCTTTAGCAGTGGATTT
AACGAACTCGATCGCGTGCTTGGTGGTGGAGTTGTGCCAGGTTCTGCTATTCTGATTGGTGGTCACCCTGGTGCGGGGAA
AAGCACGTTGCTACTCCAAGTGATGTGCGGATTATCTAAAGAAATTCCGACGCTATATGTGACAGGCGAGGAATCGCTCC
AACAAGTCGCAATGCGTGCTAACCGTTTAGGTTTACCAACAGAGCACCTCAAAATGCTTTCTGAAACCTCGGTTGAGCAT
ATTTGTAACATTGCCGATCAAGAAAAACCCCAAATTATGGTGATTGACTCTATTCAAGTGATGCACCTTTCAGATATTCA
ATCTTCACCAGGTTCGGTTTCTCAAGTGCGTGAATGTGCTTCATTCCTCACACGCTATGCGAAAACCCGCCAAGTGGCAA
TTATTATGGTGGGGCACGTAACCAAAGATGGTACGCTTGCTGGACCTAAAGTTTTAGAGCACGCGATTGATGCTTCACTC
TTGTTAGAAGGCGAATCGGACTCTCGCTATCGTACTTTGCGCAGCCAAAAAAACCGTTTTGGTGCCGTAAATGAGCTAGG
TGTGTTTGCGATGACAGAACAAGGACTTCGTGAAGTCAAAAACCCATCTGCAATCTTTTTAAGCCGTAGCGATGAGTTGG
TTTCAGGCAGTTCTGTGGTTGTGCTTTGGGAAGGAACTCGCCCGCTCTTGGTAGAAATTCAAGCCTTAGTCGATCATTCA
ATGCTTGCCAACCCGCGCCGTGTTGCTGTGGGTTTAGATCACAATCGCTTATCACTATTGCTTGCTGTTTTACACCGCCA
CGGTGGATTGCAAATGTCAGACCAAGATGTATTTGTCAACGTAGTGGGCGGCGTAAAAGTGACAGAAACTAGTGCAGACT
TAGCCTTAATTCTCGCCTTAATTTCTAGCTTTAGAAACCGACCACTTCCGCAAGATCTCGTGATATTTGGCGAAGTGGGC
TTAGCAGGCGAAATTCGTCCTGTGCCAAGTGGTCAAGAACGTATTTCTGAGGCTGCTAAACACGGTTTCAAGCGTGCCAT
TGTGCCTTTTGGGAATATGCCTAAAAAATCGATTAAGGGAATGGAAGTTTTTGGCGTGAAAAAACTCAGTGATGCGTTAG
ATATTTTAGGCAATTTGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(83-224)

Subunit ChlI of Mg-chelatase (ChlI)

(347-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.904

99.346

0.486
  radA Streptococcus mitis NCTC 12261

45.197

99.782

0.451
  radA Streptococcus mitis SK321

44.783

100

0.449
  radA Streptococcus pneumoniae TIGR4

44.835

99.129

0.444
  radA Streptococcus pneumoniae R6

44.835

99.129

0.444
  radA Streptococcus pneumoniae Rx1

44.835

99.129

0.444
  radA Streptococcus pneumoniae D39

44.835

99.129

0.444

Multiple sequence alignment