Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E5E97_RS02090 Genome accession   NZ_CP038513
Coordinates   397628..398869 (+) Length   413 a.a.
NCBI ID   WP_118880269.1    Uniprot ID   -
Organism   Aeromonas sp. 2692-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 392628..403869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5E97_RS02065 (E5E97_02065) ampD 393008..393580 (-) 573 WP_171279817.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  E5E97_RS02070 (E5E97_02070) - 393728..394198 (+) 471 WP_171279818.1 TIGR02281 family clan AA aspartic protease -
  E5E97_RS02075 (E5E97_02075) nadC 394204..395061 (+) 858 WP_171279819.1 carboxylating nicotinate-nucleotide diphosphorylase -
  E5E97_RS02080 (E5E97_02085) - 395384..395800 (+) 417 WP_118882219.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  E5E97_RS02085 (E5E97_02090) tapB 395807..397512 (+) 1706 Protein_389 PilB family type IVa pilus assembly ATPase TapB -
  E5E97_RS02090 (E5E97_02095) pilC 397628..398869 (+) 1242 WP_118880269.1 type II secretion system F family protein Machinery gene
  E5E97_RS02095 (E5E97_02100) pilD 398892..399764 (+) 873 WP_118880267.1 A24 family peptidase Machinery gene
  E5E97_RS02100 (E5E97_02105) coaE 399784..400398 (+) 615 WP_118880265.1 dephospho-CoA kinase -
  E5E97_RS02105 (E5E97_02110) zapD 400436..401158 (+) 723 WP_024945431.1 cell division protein ZapD -
  E5E97_RS02110 (E5E97_02115) yacG 401168..401362 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  E5E97_RS02115 (E5E97_02120) mutT 401423..401836 (-) 414 WP_171279820.1 8-oxo-dGTP diphosphatase MutT -
  E5E97_RS02120 (E5E97_02125) - 401845..403029 (-) 1185 WP_171279821.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45422.58 Da        Isoelectric Point: 9.8637

>NTDB_id=354922 E5E97_RS02090 WP_118880269.1 397628..398869(+) (pilC) [Aeromonas sp. 2692-1]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
IAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=354922 E5E97_RS02090 WP_118880269.1 397628..398869(+) (pilC) [Aeromonas sp. 2692-1]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAGCAAGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCGCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAAGCGCTGCGCCGCCATCCCC
GCCACTTTGACGATCTCTACTGCGATCTAGTGGAGGCTGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCAGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATATTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTTGTCATTCCCCAGTTCGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTACGTGATCTTTGGCGGCATAGCG
ATCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATATTGACCAT
CCCCGTGGTTGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGCACTCTCTCCACTACCTTCTCCGCCGGCA
TCCCGCTGGTAGATGCCTTGGTCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
AATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGTTGGGGGTGCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

45.906

97.579

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment