Detailed information NTG0354923

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E5E97_RS02095
• Genome accession: NZ_CP038513
• Coordinates: 398892..399764 (+)
• Length: 290 a.a.
• NCBI ID: WP_118880267.1
• Uniprot ID: -
• Organism: Aeromonas sp. 2692-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 393892..404764

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E5E97_RS02075 (E5E97_02075)	nadC	394204..395061 (+)	858	WP_171279819.1	carboxylating nicotinate-nucleotide diphosphorylase	-
E5E97_RS02080 (E5E97_02085)	-	395384..395800 (+)	417	WP_118882219.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
E5E97_RS02085 (E5E97_02090)	tapB	395807..397512 (+)	1706	Protein_389	PilB family type IVa pilus assembly ATPase TapB	-
E5E97_RS02090 (E5E97_02095)	pilC	397628..398869 (+)	1242	WP_118880269.1	type II secretion system F family protein	Machinery gene
E5E97_RS02095 (E5E97_02100)	pilD	398892..399764 (+)	873	WP_118880267.1	A24 family peptidase	Machinery gene
E5E97_RS02100 (E5E97_02105)	coaE	399784..400398 (+)	615	WP_118880265.1	dephospho-CoA kinase	-
E5E97_RS02105 (E5E97_02110)	zapD	400436..401158 (+)	723	WP_024945431.1	cell division protein ZapD	-
E5E97_RS02110 (E5E97_02115)	yacG	401168..401362 (+)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
E5E97_RS02115 (E5E97_02120)	mutT	401423..401836 (-)	414	WP_171279820.1	8-oxo-dGTP diphosphatase MutT	-
E5E97_RS02120 (E5E97_02125)	-	401845..403029 (-)	1185	WP_171279821.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32508.77 Da
• Isoelectric Point: 6.7409

>NTDB_id=354923 E5E97_RS02095 WP_118880267.1 398892..399764(+) (pilD) [Aeromonas sp. 2692-1]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=354923 E5E97_RS02095 WP_118880267.1 398892..399764(+) (pilD) [Aeromonas sp. 2692-1]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTACCGCGTTCTGCCTGCCCCCATTGCGGCCACGCA
ATCACGGCCATAGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATACCCACCGGGCTGGGGCT
TGCTGGCTGCCTTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTTCTGCCGGACCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCTTGGCTCGGCTGGCAGGCACTGCCCATCGTGCTGCTGCTCTCATCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGTCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGATGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.672	98.966	0.61
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462