Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   E4K02_RS16080 Genome accession   NZ_CP038258
Coordinates   3278830..3280056 (-) Length   408 a.a.
NCBI ID   WP_135013311.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 39741     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3273830..3285056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E4K02_RS16050 (E4K02_16050) - 3273861..3275171 (+) 1311 WP_135013315.1 tetratricopeptide repeat protein -
  E4K02_RS16055 (E4K02_16055) - 3275248..3275574 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  E4K02_RS16060 (E4K02_16060) rlmB 3275676..3276425 (+) 750 WP_001118149.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  E4K02_RS16065 (E4K02_16065) - 3276461..3277375 (+) 915 WP_000075011.1 DMT family transporter -
  E4K02_RS16070 (E4K02_16070) coaE 3277372..3277968 (-) 597 WP_000874125.1 dephospho-CoA kinase -
  E4K02_RS19910 (E4K02_16075) pilD 3277970..3278830 (-) 861 WP_135013313.1 A24 family peptidase Machinery gene
  E4K02_RS16080 (E4K02_16080) pilC 3278830..3280056 (-) 1227 WP_135013311.1 type II secretion system F family protein Machinery gene
  E4K02_RS16085 (E4K02_16085) pilB 3280086..3281798 (-) 1713 Protein_3107 type IV-A pilus assembly ATPase PilB -
  E4K02_RS16090 (E4K02_16090) tpiA 3282089..3282883 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  E4K02_RS16095 (E4K02_16095) secG 3282896..3283225 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  E4K02_RS16115 (E4K02_16115) rimP 3283867..3284391 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44921.42 Da        Isoelectric Point: 9.8960

>NTDB_id=352837 E4K02_RS16080 WP_135013311.1 3278830..3280056(-) (pilC) [Acinetobacter baumannii strain 39741]
MAVKKAQMMPTFAYEGVDRKGVIIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMQEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=352837 E4K02_RS16080 WP_135013311.1 3278830..3280056(-) (pilC) [Acinetobacter baumannii strain 39741]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAATAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAACTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTGGTTTATAAAGCAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGAGTGTCTAATCGTTTTCCATCTATGGCTATACAAATGGTGGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACTTCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTGGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.51

100

0.995
  pilC Acinetobacter baylyi ADP1

85.784

100

0.858
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.58

99.265

0.532
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.842

99.02

0.404
  pilC Thermus thermophilus HB27

36.658

98.284

0.36

Multiple sequence alignment