Detailed information NTG0352845

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: E4K02_RS19910
• Genome accession: NZ_CP038258
• Coordinates: 3277970..3278830 (-)
• Length: 286 a.a.
• NCBI ID: WP_135013313.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain 39741
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3272970..3283830

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E4K02_RS16050 (E4K02_16050)	-	3273861..3275171 (+)	1311	WP_135013315.1	tetratricopeptide repeat protein	-
E4K02_RS16055 (E4K02_16055)	-	3275248..3275574 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
E4K02_RS16060 (E4K02_16060)	rlmB	3275676..3276425 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
E4K02_RS16065 (E4K02_16065)	-	3276461..3277375 (+)	915	WP_000075011.1	DMT family transporter	-
E4K02_RS16070 (E4K02_16070)	coaE	3277372..3277968 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
E4K02_RS19910 (E4K02_16075)	pilD	3277970..3278830 (-)	861	WP_135013313.1	A24 family peptidase	Machinery gene
E4K02_RS16080 (E4K02_16080)	pilC	3278830..3280056 (-)	1227	WP_135013311.1	type II secretion system F family protein	Machinery gene
E4K02_RS16085 (E4K02_16085)	pilB	3280086..3281798 (-)	1713	Protein_3107	type IV-A pilus assembly ATPase PilB	-
E4K02_RS16090 (E4K02_16090)	tpiA	3282089..3282883 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
E4K02_RS16095 (E4K02_16095)	secG	3282896..3283225 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32134.55 Da
• Isoelectric Point: 7.1041

>NTDB_id=352845 E4K02_RS19910 WP_135013313.1 3277970..3278830(-) (pilD) [Acinetobacter baumannii strain 39741]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCSACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=352845 E4K02_RS19910 WP_135013313.1 3277970..3278830(-) (pilD) [Acinetobacter baumannii strain 39741]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA
ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCTCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG
TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Acinetobacter baumannii D1279779	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437