Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   GOM48_RS06220 Genome accession   NZ_CP046523
Coordinates   1226006..1226656 (-) Length   216 a.a.
NCBI ID   WP_235096463.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1221006..1231656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS06200 (GOM48_06195) - 1221600..1222784 (-) 1185 WP_235096460.1 hypothetical protein -
  GOM48_RS06205 (GOM48_06200) - 1222781..1223374 (-) 594 WP_235096461.1 ATP-binding cassette domain-containing protein -
  GOM48_RS06210 - 1223407..1223595 (-) 189 WP_235098753.1 hypothetical protein -
  GOM48_RS06215 (GOM48_06205) comEC/celB 1223782..1226022 (-) 2241 WP_235096462.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GOM48_RS06220 (GOM48_06210) comEA/celA/cilE 1226006..1226656 (-) 651 WP_235096463.1 helix-hairpin-helix domain-containing protein Machinery gene
  GOM48_RS06225 (GOM48_06215) - 1226723..1227292 (-) 570 WP_235096464.1 GNAT family N-acetyltransferase -
  GOM48_RS06230 (GOM48_06220) ald 1227469..1228581 (+) 1113 WP_235096465.1 alanine dehydrogenase -
  GOM48_RS06235 (GOM48_06225) - 1228644..1229630 (-) 987 WP_235096466.1 PhoH family protein -
  GOM48_RS06240 (GOM48_06230) - 1229711..1229926 (-) 216 WP_001232084.1 YozE family protein -
  GOM48_RS06245 (GOM48_06235) - 1229923..1230528 (-) 606 WP_235096467.1 GrpB family protein -
  GOM48_RS06250 (GOM48_06240) cvfB 1230540..1231394 (-) 855 WP_125399164.1 RNA-binding virulence regulatory protein CvfB -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23272.46 Da        Isoelectric Point: 6.5108

>NTDB_id=352720 GOM48_RS06220 WP_235096463.1 1226006..1226656(-) (comEA/celA/cilE) [Streptococcus oralis strain SOD]
MEAIIEKIKEYKIIVICAGLGLALGGFFLLKPTSQTPVKETNLQTEVAAVSKDSSSEKEVKKEEKEESPEQDLITVDVKG
AVKSPGIYDLPLGSRVHDAVQKAGGLTEEADSKSLNLAQKVSDEALVYVPTKGEEAASQQAASGTSSSTSKDKKVNLNKA
SLEELKQVKGLGRKRAQDIIDHREANGKFKSVDELKKVSGIGTKTIEKLKDYVTVD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=352720 GOM48_RS06220 WP_235096463.1 1226006..1226656(-) (comEA/celA/cilE) [Streptococcus oralis strain SOD]
ATGGAAGCAATTATCGAGAAAATCAAAGAGTATAAAATCATTGTTATCTGTGCTGGTTTGGGTTTGGCCCTCGGCGGATT
TTTCCTACTAAAGCCAACTTCACAAACACCCGTCAAAGAAACAAATTTGCAGACTGAAGTCGCAGCTGTTTCAAAGGATT
CATCGTCTGAAAAGGAAGTCAAGAAGGAAGAAAAGGAAGAATCTCCTGAGCAAGATTTAATCACAGTAGATGTCAAAGGT
GCTGTCAAATCACCAGGGATTTATGACTTGCCTCTTGGCAGTCGAGTTCACGATGCCGTTCAGAAGGCAGGTGGATTGAC
AGAGGAGGCAGATAGCAAGTCGCTCAATCTAGCTCAGAAAGTCAGTGACGAGGCTCTTGTCTATGTTCCAACTAAGGGAG
AAGAAGCAGCTAGTCAGCAGGCCGCCTCTGGAACGTCTTCTTCTACAAGTAAAGATAAGAAAGTCAACCTCAATAAGGCC
AGTCTGGAAGAACTCAAACAGGTCAAAGGATTGGGCAGAAAAAGAGCTCAGGATATTATTGACCATCGTGAGGCAAATGG
CAAGTTCAAGTCAGTAGATGAACTCAAGAAAGTATCTGGCATTGGCACAAAGACCATAGAAAAGCTAAAAGATTATGTCA
CAGTGGACTAA

Domains

Predicted by InterProScan.

SLBB domain (SLBB)

(76-126)

Helix-hairpin-helix motif (HHH_3)

(152-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.