Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   E3H47_RS00590 Genome accession   NZ_CP038022
Coordinates   121396..122526 (-) Length   376 a.a.
NCBI ID   WP_138000408.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 116396..127526
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS00560 (E3H47_00560) - 116523..116864 (-) 342 WP_138000407.1 RcnB family protein -
  E3H47_RS00565 (E3H47_00565) - 117059..117601 (-) 543 WP_005023666.1 glutathione peroxidase -
  E3H47_RS00570 (E3H47_00570) - 117728..118342 (-) 615 WP_017401224.1 hypothetical protein -
  E3H47_RS00575 (E3H47_00575) - 118557..119312 (-) 756 WP_005023664.1 helix-turn-helix transcriptional regulator -
  E3H47_RS00580 (E3H47_00580) - 119428..120321 (+) 894 WP_005017258.1 DMT family transporter -
  E3H47_RS00585 (E3H47_00585) - 120782..121351 (-) 570 WP_034671138.1 L-threonylcarbamoyladenylate synthase -
  E3H47_RS00590 (E3H47_00590) dprA 121396..122526 (-) 1131 WP_138000408.1 DNA-processing protein DprA Machinery gene
  E3H47_RS00595 (E3H47_00595) tsaP 122542..123690 (-) 1149 WP_034684457.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  E3H47_RS00600 (E3H47_00600) def 123815..124345 (+) 531 WP_075041018.1 peptide deformylase -
  E3H47_RS00605 (E3H47_00605) - 124444..124860 (+) 417 WP_081374984.1 DUF2946 family protein -
  E3H47_RS00610 (E3H47_00610) - 124926..126953 (+) 2028 WP_138000409.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41815.60 Da        Isoelectric Point: 6.5819

>NTDB_id=351481 E3H47_RS00590 WP_138000408.1 121396..122526(-) (dprA) [Acinetobacter radioresistens strain DD78]
MIAELSQLHYHSLKLWYLVQHSVSSFNQLVEYFGSAEQATTPAALARWGNLKLHANHSKRAQEFYSATGQAEFEQLTQRV
LASCDFILVPEDILYPQQLHPYTDKPPILFGQGSAQALSQPQIAIVGSRKPSPHGRQVAYDFAYYLSEKGFYITSGLALG
IDEAAHQGALQHQRTIAVVGTGLDLVYPAHNRKLQEQILQYGGTIVSEFLPGTQPLKHHFPRRNRIVSGLSLGVLVAEAA
LESGSLITAQRAADQGKIIFAIPGHIYSEHHQGCHQLIREGSILVDHPEQLIEDLALPTQWHSQQQKVSSVPEPAQVPEH
LFELYQQLDWVGLDLDQIALKLPLPAAELTGHLMELELLGLCVQQSGRYLRCRPGF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=351481 E3H47_RS00590 WP_138000408.1 121396..122526(-) (dprA) [Acinetobacter radioresistens strain DD78]
ATGATTGCCGAATTATCGCAGCTTCATTATCACAGTCTGAAGCTGTGGTATTTGGTCCAGCATTCAGTTTCAAGTTTTAA
CCAGCTGGTTGAGTATTTTGGCAGTGCTGAACAGGCAACCACTCCGGCAGCATTAGCGCGCTGGGGCAATTTAAAACTGC
ATGCCAATCATTCCAAGCGGGCACAGGAATTTTATAGCGCAACCGGTCAGGCTGAGTTTGAGCAACTGACCCAACGGGTA
CTGGCAAGTTGCGATTTTATTTTAGTGCCGGAAGATATACTGTATCCGCAGCAGCTGCACCCTTATACAGATAAGCCTCC
GATCCTATTTGGCCAAGGTTCTGCTCAAGCCTTAAGTCAACCCCAGATCGCGATTGTAGGCAGTCGCAAACCAAGCCCGC
ATGGCCGGCAAGTAGCCTACGACTTTGCGTATTATCTGAGTGAAAAAGGGTTTTATATTACCAGTGGACTTGCCTTGGGA
ATTGACGAGGCAGCACATCAAGGGGCATTGCAGCATCAGCGCACTATTGCTGTAGTCGGAACCGGACTGGATCTGGTCTA
TCCAGCCCATAACCGTAAGCTTCAAGAACAGATACTTCAATACGGCGGTACAATTGTCAGTGAGTTTTTACCGGGAACCC
AACCACTCAAGCATCATTTTCCACGCCGTAACCGTATTGTTAGTGGTTTGAGTCTAGGTGTACTGGTGGCAGAAGCCGCT
TTAGAAAGTGGTTCATTGATTACTGCACAGCGTGCGGCCGATCAGGGCAAGATTATTTTTGCCATTCCCGGCCATATCTA
CAGCGAGCATCATCAAGGCTGTCATCAACTCATCCGTGAAGGCTCCATACTGGTAGATCATCCGGAACAGCTGATTGAAG
ATCTGGCTTTACCGACCCAGTGGCACAGCCAGCAACAAAAGGTAAGCAGTGTACCCGAGCCGGCACAGGTACCTGAACAT
CTATTTGAACTGTACCAACAACTAGACTGGGTAGGACTGGATCTAGACCAGATTGCTCTTAAATTGCCATTACCTGCGGC
TGAATTGACCGGACATCTGATGGAACTTGAGTTACTTGGACTATGTGTTCAGCAATCTGGGCGCTATCTGCGTTGCCGTC
CGGGCTTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(87-285)

DprA winged helix domain (DprA_WH)

(324-367)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

67.725

100

0.681
  dprA Acinetobacter baumannii D1279779

67.725

100

0.681
  dprA Acinetobacter baylyi ADP1

65.526

100

0.662
  dprA Neisseria meningitidis strain C311

37.783

100

0.399
  dprA Neisseria meningitidis MC58

37.783

100

0.399
  dprA Neisseria gonorrhoeae MS11

36.951

100

0.38
  dprA Neisseria gonorrhoeae strain FA1090

36.693

100

0.378
  dprA Vibrio cholerae strain A1552

43.038

84.043

0.362

Multiple sequence alignment