Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   E3H47_RS00595 Genome accession   NZ_CP038022
Coordinates   122542..123690 (-) Length   382 a.a.
NCBI ID   WP_034684457.1    Uniprot ID   -
Organism   Acinetobacter radioresistens strain DD78     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 117542..128690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3H47_RS00570 (E3H47_00570) - 117728..118342 (-) 615 WP_017401224.1 hypothetical protein -
  E3H47_RS00575 (E3H47_00575) - 118557..119312 (-) 756 WP_005023664.1 helix-turn-helix transcriptional regulator -
  E3H47_RS00580 (E3H47_00580) - 119428..120321 (+) 894 WP_005017258.1 DMT family transporter -
  E3H47_RS00585 (E3H47_00585) - 120782..121351 (-) 570 WP_034671138.1 L-threonylcarbamoyladenylate synthase -
  E3H47_RS00590 (E3H47_00590) dprA 121396..122526 (-) 1131 WP_138000408.1 DNA-processing protein DprA Machinery gene
  E3H47_RS00595 (E3H47_00595) tsaP 122542..123690 (-) 1149 WP_034684457.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  E3H47_RS00600 (E3H47_00600) def 123815..124345 (+) 531 WP_075041018.1 peptide deformylase -
  E3H47_RS00605 (E3H47_00605) - 124444..124860 (+) 417 WP_081374984.1 DUF2946 family protein -
  E3H47_RS00610 (E3H47_00610) - 124926..126953 (+) 2028 WP_138000409.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 42093.34 Da        Isoelectric Point: 9.4267

>NTDB_id=351482 E3H47_RS00595 WP_034684457.1 122542..123690(-) (tsaP) [Acinetobacter radioresistens strain DD78]
MKKVFKGSALRALGFKKQFIALAICSSLGIIMPGMAEAASRNINPPSLKASAPNVYVVKRGDTLWDIAGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCTLDGRPLIGKDEGDGCEGIIRRYGGQTSMQPQVRVESLNNAIPVIPLEHIRVWLERT
LIMSPDSVVNTPYILGTADNRVLAAAGQTVYARGNGLQVGQRYAVYREGEPYIFTDANGKSYNAGVELLQVASGVAVQNE
QDITTLELTQSYNGEVRRGDRVMPEYDPMLPTLFYPTIDHQVTEGGQVIRVMGSIGTAARHSVVTINRGNIHGVQSGQVF
SVYQQGEVVRDPKTREQIKLPSQKVGNIMIFRTFDQLSYAYVLDSALPIKVGSGIQAPPMAE

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=351482 E3H47_RS00595 WP_034684457.1 122542..123690(-) (tsaP) [Acinetobacter radioresistens strain DD78]
ATGAAAAAAGTTTTCAAAGGCAGCGCACTTCGTGCCTTGGGGTTTAAAAAGCAGTTTATTGCTCTCGCAATCTGTTCAAG
TTTGGGAATAATCATGCCTGGCATGGCTGAAGCAGCCAGCCGTAATATAAATCCGCCCTCTTTAAAAGCCAGTGCTCCTA
ATGTTTATGTGGTCAAAAGAGGGGATACTTTATGGGATATCGCCGGAAAATTCTTGAGTAAGCCGTGGCGCTGGCCAGAA
ATCTGGGCCAGCAACAAACATGTCAAGAATCCACACTGGATTTATCCGGGCGACCGTTTATTGCTGTGCACTCTAGACGG
ACGACCGCTGATCGGTAAAGATGAAGGTGACGGCTGTGAAGGTATTATTCGCCGTTATGGTGGCCAGACCAGTATGCAGC
CACAAGTTCGTGTTGAATCCCTAAATAATGCTATTCCAGTTATTCCGCTTGAACATATTCGGGTCTGGCTGGAACGCACC
CTGATAATGTCACCAGATTCAGTGGTCAATACCCCCTATATTTTAGGCACGGCTGATAACCGGGTATTGGCTGCTGCCGG
TCAAACCGTTTACGCACGCGGTAATGGTCTGCAAGTTGGTCAGCGTTATGCAGTTTATCGTGAGGGTGAGCCTTACATAT
TCACCGATGCTAATGGCAAGTCATATAATGCCGGTGTAGAGCTGCTTCAGGTGGCTTCCGGCGTAGCTGTGCAGAATGAA
CAGGATATTACTACGCTAGAATTAACGCAAAGTTATAATGGGGAAGTCCGTCGCGGGGATCGGGTCATGCCAGAATATGA
TCCTATGTTACCTACCCTGTTCTATCCAACAATTGACCATCAGGTGACTGAAGGCGGTCAGGTGATTCGGGTGATGGGAT
CAATCGGTACGGCAGCCAGACACAGTGTGGTAACTATTAACCGGGGCAATATTCATGGTGTTCAGTCCGGTCAGGTATTC
AGTGTCTATCAGCAGGGTGAAGTTGTACGTGATCCGAAAACCCGCGAACAAATCAAACTGCCAAGTCAAAAAGTTGGTAA
TATTATGATTTTCCGTACTTTTGACCAGTTGAGCTATGCTTATGTACTGGACAGCGCCCTACCTATCAAAGTAGGTTCCG
GCATCCAGGCGCCGCCAATGGCAGAGTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.789

99.476

0.704

Multiple sequence alignment