Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AHTJR_RS14055 Genome accession   NZ_CP038009
Coordinates   2992295..2993524 (+) Length   409 a.a.
NCBI ID   WP_134252945.1    Uniprot ID   A0A4P7B7Z9
Organism   Acinetobacter haemolyticus strain TJR01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2987295..2998524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJR_RS14020 (AHTJR_14020) rimP 2987886..2988410 (-) 525 WP_005083847.1 ribosome maturation factor RimP -
  AHTJR_RS14040 (AHTJR_14040) secG 2989045..2989374 (-) 330 WP_004637686.1 preprotein translocase subunit SecG -
  AHTJR_RS14045 (AHTJR_14045) tpiA 2989387..2990178 (-) 792 WP_075316302.1 triose-phosphate isomerase -
  AHTJR_RS14050 (AHTJR_14050) pilB 2990555..2992270 (+) 1716 WP_134252944.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AHTJR_RS14055 (AHTJR_14055) pilC 2992295..2993524 (+) 1230 WP_134252945.1 type II secretion system F family protein Machinery gene
  AHTJR_RS14060 (AHTJR_14060) pilD 2993537..2994397 (+) 861 WP_134252946.1 prepilin peptidase Machinery gene
  AHTJR_RS14065 (AHTJR_14065) coaE 2994399..2995004 (+) 606 WP_134252947.1 dephospho-CoA kinase -
  AHTJR_RS14070 (AHTJR_14070) - 2995001..2995912 (-) 912 WP_134252948.1 DMT family transporter -
  AHTJR_RS14080 (AHTJR_14080) rlmB 2995952..2996698 (-) 747 WP_004637678.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AHTJR_RS14085 (AHTJR_14085) - 2996807..2997133 (-) 327 WP_004637677.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44966.34 Da        Isoelectric Point: 9.8565

>NTDB_id=351251 AHTJR_RS14055 WP_134252945.1 2992295..2993524(+) (pilC) [Acinetobacter haemolyticus strain TJR01]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSMWMQEYWFILIIVVGAIIA
SFLEAKKRSKKFRDTLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDVA
TGQQLQFAMRASNRFPSMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=351251 AHTJR_RS14055 WP_134252945.1 2992295..2993524(+) (pilC) [Acinetobacter haemolyticus strain TJR01]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACTTTTGCTTACGAAGGGGTAGACCGCAAAGGGGCAAAAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTAGCCAAAGTCACATTACGCAAACAAGGGGTAACGATTAAGAACATTCGAGAAAAAC
GTAAAAACATTCTTGAAGGTTTAATGAAGAAGAAAGTCACCACCCTTGACATCACCGTATTTACACGCCAACTGGCAACC
ATGATGAAAGCTGGTGTCCCACTCGTGCAAGGCTTTGAAATCGTGGCTGAAGGTTTAGAGAATCCATCCATGCGTGAAGT
GGTGCTTGGACTCAAAGGCGAAGTTGAAGGCGGTAATACCTTTGCAGGTGCATTAAGAAAATACCCACAATACTTTGACA
ACCTCTTTTGTTCTTTAGTCGAGTCTGGTGAGCAATCGGGTGCACTGGAAACCATGCTCGATCGCGTCGCAATCTATAAA
GAGAAAAGTGAGTTACTCAAACAAAAAATCAAAAAAGCCATGAAATATCCTGCGACAGTTATCGTGGTTGCAGTGATTGT
CACGATTATTTTGATGGTTAAGGTGGTTCCTGTGTTCCAAGATTTATTTAGCTCATTTGGTGCAGACTTACCTGCCTTTA
CCAAAATGGTCGTGAATATGTCGATGTGGATGCAAGAGTATTGGTTCATTTTAATTATTGTTGTCGGTGCAATTATTGCC
AGTTTTCTTGAGGCAAAAAAACGTAGTAAAAAGTTCCGTGACACTCTTGATAAACTTGCATTACGCTTACCGATTTTTGG
TGATTTGGTTTATAAAGCCATTATTGCGCGTTATAGTCGTACACTTGCAACAACATTTGCAGCAGGGGTTCCATTGATTG
ATGCGCTCGAATCAACGGCTGGTGCAACCAATAACGTTGTTTACGAAGATGCAGTGATGAAAATTCGTGAAGATGTTGCT
ACAGGACAACAGTTACAATTTGCTATGCGCGCTTCTAACCGTTTTCCATCAATGGCGATTCAAATGGTTGCGATTGGTGA
AGAGTCCGGTGCTTTAGATAGCATGCTAGATAAAGTTGCCACTCACTTTGAAAATGAAGTCGATAATGCCGTTGATGGCT
TAACCTCAATGATGGAACCGTTAATTATGGCGATTCTAGGAGTACTTGTGGGTGGTCTCGTTGTTGCGATGTACCTTCCA
ATCTTCCAAATGGGTTCAGTAGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P7B7Z9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.647

99.756

0.924
  pilC Acinetobacter baylyi ADP1

86.029

99.756

0.858
  pilC Pseudomonas stutzeri DSM 10701

60.934

99.511

0.606
  pilC Legionella pneumophila strain ERS1305867

53.58

99.022

0.531
  pilG Neisseria meningitidis 44/76-A

46.734

97.311

0.455
  pilG Neisseria gonorrhoeae MS11

46.734

97.311

0.455
  pilC Vibrio cholerae strain A1552

41.667

99.756

0.416
  pilC Vibrio campbellii strain DS40M4

40.488

100

0.406

Multiple sequence alignment