Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   GL188_RS07865 Genome accession   NZ_CP046359
Coordinates   1563110..1563706 (-) Length   198 a.a.
NCBI ID   WP_000966754.1    Uniprot ID   A0A1X1J688
Organism   Streptococcus pneumoniae strain 573     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1558110..1568706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL188_RS07845 (GL188_08010) - 1559041..1559745 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  GL188_RS07850 (GL188_08015) - 1559836..1560447 (-) 612 WP_000804594.1 NUDIX hydrolase N-terminal domain-containing protein -
  GL188_RS07855 (GL188_08020) - 1560434..1561807 (-) 1374 WP_000778698.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  GL188_RS07860 (GL188_08025) - 1561891..1562934 (-) 1044 WP_000814633.1 D-alanine--D-alanine ligase -
  GL188_RS07865 (GL188_08030) recR 1563110..1563706 (-) 597 WP_000966754.1 recombination mediator RecR Machinery gene
  GL188_RS07870 (GL188_08035) pbp2b 1563717..1565774 (-) 2058 WP_073177150.1 penicillin-binding protein 2B -
  GL188_RS07875 (GL188_08040) - 1565974..1566825 (+) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  GL188_RS07880 (GL188_08045) - 1566841..1567725 (-) 885 WP_000222983.1 ROK family protein -
  GL188_RS07885 (GL188_08050) - 1567743..1568660 (-) 918 WP_001281507.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21732.87 Da        Isoelectric Point: 4.4927

>NTDB_id=351252 GL188_RS07865 WP_000966754.1 1563110..1563706(-) (recR) [Streptococcus pneumoniae strain 573]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSDDDVNEFAKNLLSAKRELTYCSICGRLTDDDPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=351252 GL188_RS07865 WP_000966754.1 1563110..1563706(-) (recR) [Streptococcus pneumoniae strain 573]
ATGCTTTATCCAACACCTATTGCTAAGCTAATTGACAGTTATTCTAAGTTACCGGGTATCGGGATTAAGACGGCTACACG
TCTGGCCTTCTATACTATTGGAATGTCTGATGACGATGTCAATGAATTTGCTAAAAATCTCCTTTCTGCTAAGAGAGAGC
TGACCTACTGTTCCATCTGCGGTCGCCTGACTGATGACGATCCTTGCTCTATCTGTACCGATCCGACTCGTGACCAGACA
ACGATTTTAGTTCTCGAAGATAGTCGCGATGTGGCAGCCATGGAGAATATCCAAGAATACCATGGACTCTATCATGTCTT
GCATGGACTCATTTCTCCCATGAATGGTATTAGTCCAGATGATATCAATCTCAAGAGCCTCATGACTCGTCTTATGGATA
GTGAAGTTTCAGAGGTAATCGTAGCAACAAATGCTACAGCAGATGGTGAAGCGACATCCATGTATCTTTCACGTTTGCTC
AAGCCAGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTCGGAGCGGACATTGAGTATGCGGATGAAGTGAC
GCTCTTACGAGCCATTGAAAATCGAACAGAGTTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X1J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

62.121

100

0.621
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment